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The map label for this gene is rpfG [H]

Identifier: 229917574

GI number: 229917574

Start: 1820373

End: 1821851

Strand: Direct

Name: rpfG [H]

Synonym: EAT1b_1849

Alternate gene names: 229917574

Gene position: 1820373-1821851 (Clockwise)

Preceding gene: 229917573

Following gene: 229917577

Centisome position: 60.68

GC content: 46.45

Gene sequence:

>1479_bases
ATGTTTGGACGTTTTCAACGGACGCTCGTGATGAACTATATCATCGGCTCAGGTTTAGCCGTATTTGGAGTGGGTGGTGT
CTTTATTTTTCAAACGCTTGACCTGTCCATTCGAGAGATTTTACTACTGTTAGGCATCATGTTGGGCTCAGGGATAGTTA
TGATTTTCTCAGAACTACTCTTATACCGTCGCCACATTCGACCGATACGACAGCTTTTTATGACCGAATCCCCATCGATT
GACGAATTGACGTCAGCATTCGAACGAGCGAGTCGATTTCCTGTTTTAACGGTGCAACGGATTTTAGGTCCACATTTGTT
TGGGTTATCCATCCCGTCAATTGGTTTGACCGCCGTTTTCATTCAGATGGGGTGGGTTGACTTACCGTATCGTTTGATCG
GCTTGGCTGCAATCGGGGCCGTCATGATTGCGGTACTACATGCCTTGATTGAATATTTTTTGACGGTTCGATCGGTTGAG
CCATTACTGGTATACATGAAAGAAAGGCATCTCGAACTTTATCATCTGCCTATTCATGCAACGTATCGATCATTTAGTGT
CCGAACTAAATTATTGATCAGTATGCTCATTACGGGTGTCTTTCCCATCATGTTGTTCATGTTGGCATCGAGTGTGCAAT
TGTCGACTTCGAATCGGACGGATACGTATTGGAATTGGGCGTTCGTGATTCTTGTCATCATCGTTGGAATTGCAGTGCTA
TGCAGTTTCTTGCTCTATGACAATATCAAACGTCCGATTGGGCTCTTGACGTCAGGAATCGAGCAAATGGAATCAGGACA
ACTCCAGAAAATCGAGAATCCCTATTTAGATGAGTTCGCCCAATTGATTGGTGGCTTCAATCAAATGGTCGAGACGGTAA
CTGCTCGCGAACAAGAAAATGCACAGCTGTTAGACAGCCTCTTCATTTTATTCGCGGCAACGCTCGATGCACGTGACCCT
TATACAGCTGGTCATTCGGAGCGTGTCGCGATGTATTCCGTTGAGCTTGCTCGCGCCATCGGCTTACCGCATGCACAAGT
CGATTTACTCAATAAGTCGGCACTTCTACATGACATCGGAAAAATCGGGATTCGAGATGACGTCCTACTAAAAGAAGGGA
AGCTGACGGACGAAGAGTTTTCAAAAATTCAGGAACATCCGACCATTGGCATCCATATTTTGAGTCAGATTCATTTACCT
GCATCGCTTCAACCGATCTTAGCCGGGGTTCGGTCGCATCATGAACGAATCGATGGCAAGGGGTATCCGGACCGCTTACA
TGCGGTCGACATTCCATTATTCGGAAGGATTATGGCGATTGCCGATGCGTATGACGCCATGACATCAGATCGACCTTATC
GCTCTGGCATGCCGGTGGAAAAGGCACTTTCTATTTTAGAGAACGGTCGTGGGACGCAATGGGACGCAGAATTCGTAGAC
GTATTCGTCCGGCTTCGTCGTCAGGCCATATCGGCATAA

Upstream 100 bases:

>100_bases
TGCTTGAACGGGTCTCCTACAAGGAGATCCGTTTTTTTTGTGTTCAACTCAAGCGTAAATCTGGTCGATAGTAAAAGAAA
AGAGTGTAGGGGTGAGGGGA

Downstream 100 bases:

>100_bases
GAAAAGGAGCGGCACCTCGCGTGCGGCTCCTTTTATAATAGGGTCTGGAAGGCATACACCCCGAATACGGCTCCTATGAC
GACAACGACGAGATTGACCC

Product: metal dependent phosphohydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 492; Mature: 492

Protein sequence:

>492_residues
MFGRFQRTLVMNYIIGSGLAVFGVGGVFIFQTLDLSIREILLLLGIMLGSGIVMIFSELLLYRRHIRPIRQLFMTESPSI
DELTSAFERASRFPVLTVQRILGPHLFGLSIPSIGLTAVFIQMGWVDLPYRLIGLAAIGAVMIAVLHALIEYFLTVRSVE
PLLVYMKERHLELYHLPIHATYRSFSVRTKLLISMLITGVFPIMLFMLASSVQLSTSNRTDTYWNWAFVILVIIVGIAVL
CSFLLYDNIKRPIGLLTSGIEQMESGQLQKIENPYLDEFAQLIGGFNQMVETVTAREQENAQLLDSLFILFAATLDARDP
YTAGHSERVAMYSVELARAIGLPHAQVDLLNKSALLHDIGKIGIRDDVLLKEGKLTDEEFSKIQEHPTIGIHILSQIHLP
ASLQPILAGVRSHHERIDGKGYPDRLHAVDIPLFGRIMAIADAYDAMTSDRPYRSGMPVEKALSILENGRGTQWDAEFVD
VFVRLRRQAISA

Sequences:

>Translated_492_residues
MFGRFQRTLVMNYIIGSGLAVFGVGGVFIFQTLDLSIREILLLLGIMLGSGIVMIFSELLLYRRHIRPIRQLFMTESPSI
DELTSAFERASRFPVLTVQRILGPHLFGLSIPSIGLTAVFIQMGWVDLPYRLIGLAAIGAVMIAVLHALIEYFLTVRSVE
PLLVYMKERHLELYHLPIHATYRSFSVRTKLLISMLITGVFPIMLFMLASSVQLSTSNRTDTYWNWAFVILVIIVGIAVL
CSFLLYDNIKRPIGLLTSGIEQMESGQLQKIENPYLDEFAQLIGGFNQMVETVTAREQENAQLLDSLFILFAATLDARDP
YTAGHSERVAMYSVELARAIGLPHAQVDLLNKSALLHDIGKIGIRDDVLLKEGKLTDEEFSKIQEHPTIGIHILSQIHLP
ASLQPILAGVRSHHERIDGKGYPDRLHAVDIPLFGRIMAIADAYDAMTSDRPYRSGMPVEKALSILENGRGTQWDAEFVD
VFVRLRRQAISA
>Mature_492_residues
MFGRFQRTLVMNYIIGSGLAVFGVGGVFIFQTLDLSIREILLLLGIMLGSGIVMIFSELLLYRRHIRPIRQLFMTESPSI
DELTSAFERASRFPVLTVQRILGPHLFGLSIPSIGLTAVFIQMGWVDLPYRLIGLAAIGAVMIAVLHALIEYFLTVRSVE
PLLVYMKERHLELYHLPIHATYRSFSVRTKLLISMLITGVFPIMLFMLASSVQLSTSNRTDTYWNWAFVILVIIVGIAVL
CSFLLYDNIKRPIGLLTSGIEQMESGQLQKIENPYLDEFAQLIGGFNQMVETVTAREQENAQLLDSLFILFAATLDARDP
YTAGHSERVAMYSVELARAIGLPHAQVDLLNKSALLHDIGKIGIRDDVLLKEGKLTDEEFSKIQEHPTIGIHILSQIHLP
ASLQPILAGVRSHHERIDGKGYPDRLHAVDIPLFGRIMAIADAYDAMTSDRPYRSGMPVEKALSILENGRGTQWDAEFVD
VFVRLRRQAISA

Specific function: Positively regulates the synthesis of extracellular enzymes and extracellular polysaccharides. The cell-cell signaling system encoded by rpf genes is required for full virulence and is implicated in regulation of the formation and dispersal of biofilms [H

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR003607
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 55147; Mature: 55147

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS50885 HAMP ; PS00572 GLYCOSYL_HYDROL_F1_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFGRFQRTLVMNYIIGSGLAVFGVGGVFIFQTLDLSIREILLLLGIMLGSGIVMIFSELL
CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
LYRRHIRPIRQLFMTESPSIDELTSAFERASRFPVLTVQRILGPHLFGLSIPSIGLTAVF
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCHHHCCCCCCHHHHHHH
IQMGWVDLPYRLIGLAAIGAVMIAVLHALIEYFLTVRSVEPLLVYMKERHLELYHLPIHA
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCEEEEECHHH
TYRSFSVRTKLLISMLITGVFPIMLFMLASSVQLSTSNRTDTYWNWAFVILVIIVGIAVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHHHHHHHH
CSFLLYDNIKRPIGLLTSGIEQMESGQLQKIENPYLDEFAQLIGGFNQMVETVTAREQEN
HHHHHHHCCCHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AQLLDSLFILFAATLDARDPYTAGHSERVAMYSVELARAIGLPHAQVDLLNKSALLHDIG
HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
KIGIRDDVLLKEGKLTDEEFSKIQEHPTIGIHILSQIHLPASLQPILAGVRSHHERIDGK
CCCCCCCCEECCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC
GYPDRLHAVDIPLFGRIMAIADAYDAMTSDRPYRSGMPVEKALSILENGRGTQWDAEFVD
CCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHH
VFVRLRRQAISA
HHHHHHHHHHCC
>Mature Secondary Structure
MFGRFQRTLVMNYIIGSGLAVFGVGGVFIFQTLDLSIREILLLLGIMLGSGIVMIFSELL
CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
LYRRHIRPIRQLFMTESPSIDELTSAFERASRFPVLTVQRILGPHLFGLSIPSIGLTAVF
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCHHHCCCCCCHHHHHHH
IQMGWVDLPYRLIGLAAIGAVMIAVLHALIEYFLTVRSVEPLLVYMKERHLELYHLPIHA
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCEEEEECHHH
TYRSFSVRTKLLISMLITGVFPIMLFMLASSVQLSTSNRTDTYWNWAFVILVIIVGIAVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHHHHHHHH
CSFLLYDNIKRPIGLLTSGIEQMESGQLQKIENPYLDEFAQLIGGFNQMVETVTAREQEN
HHHHHHHCCCHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AQLLDSLFILFAATLDARDPYTAGHSERVAMYSVELARAIGLPHAQVDLLNKSALLHDIG
HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
KIGIRDDVLLKEGKLTDEEFSKIQEHPTIGIHILSQIHLPASLQPILAGVRSHHERIDGK
CCCCCCCCEECCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC
GYPDRLHAVDIPLFGRIMAIADAYDAMTSDRPYRSGMPVEKALSILENGRGTQWDAEFVD
CCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHH
VFVRLRRQAISA
HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11123673 [H]