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The map label for this gene is yabM [H]

Identifier: 229917409

GI number: 229917409

Start: 1633120

End: 1634667

Strand: Reverse

Name: yabM [H]

Synonym: EAT1b_1684

Alternate gene names: 229917409

Gene position: 1634667-1633120 (Counterclockwise)

Preceding gene: 229917410

Following gene: 229917408

Centisome position: 54.49

GC content: 53.29

Gene sequence:

>1548_bases
ATGCGGTCGCCAAGTAAGTTTGCGCAAGGCGTCGTTCTGTTCGCCCTTGCCGGCTACGTATCGAAACTGATCAGCTTCGC
CTATCGTGTCCCCTATCAAAACTTGGCGGGGGACTTCGGGCTTTATGCCTATCAAACCGTCTATCCGTTCGCGGCCATCG
TGGCGTCACTCGGCATTTATGCGATGCCGGTCGTCATTGCGAAAATCGGCGTCGGTGCGAAAGGGACGAATCGTAAGTTA
GAAGTCTTATGGGGAAGCTTTTACGCCTTACTCCTACTCTCGTGCATGCTTGTCGTCACGGTATGGCTGTTTGCCCCGAC
CCTGGCAAGGTGGCTCGGAGATGAGCAGCTAGCTCCTGCGCTACGTGTGATCAGTTTGAGTTATTTACTCATGCCGGCGT
CAGCCGTGTTGCGCGGCGCATTTCAATCGAGAGACGACTTACGACCGAGCGCATGGTCGCAAGTGCTCGAGAACTTTGTC
CGCGTGACGGTCATGCTGTCGTTATTGTGGATTGGGGTGCGACTCGGAAAAGATGCCTATACGCTTAGCCAGTATGCGTA
CGGTGCGACGCTCATCGGTGGAATCGTATCGATTGCCTTTTTGGTCTATCGAGCACGTAGTGTAAAGTTCATGAAGGTAC
GACGAACCACGTTTCGGAGTGGGATGAAACTCTTGTTGACGACGGGTTTCGCGGTCGGATTCGCGTCACTCGGGATTTTA
TGGATGCAACTGGTCGACTCCTTCACCATCGTCAATTTGATGGGCGGAACGTATGAGGCGAAAGTGAGCAAAGGCGTGTT
TGATCGAGGGTATCCGCTCGTGCAATTCGCCATCCTGTTCACCACGACCATCGGGATGGCCAATGTGCCGACGCTCGTCC
GTCATTATCGGGCAGGTCATCTGCAAAAGACGACGCAGGGACTCCGGTCGATGATTCGTGTGACGACAGCGATTGCTGGT
GCAGCGACTATCGGATTGATGGGTGTCATGTTTTTCTTAAATGTGGCCCTGTTTGAAGATGAATCTGGGACACGAGCCCT
TGTCTTCTTAGCGACGAGCACGTTCGCTGCCTCCTTGGCGATTGCGAGCATGACATGTTTGCAGGCGATTGACCGAGAGT
GGGTCGCGGCACGGAGCATGGTCGTCGCAATGTTAGTGAAAAGTGCGGTAAACGCATGGCTCGTACCGAGTTACGGAATT
GAAGGCGCGGCAATCGGAACATCCATTGGATTTTTAGCGATGGCGTTCTATAATTTCCGGGCGCTCGACCGCTCGATTCC
GCTCGGGTCATTTCGATCGAAACACTATAAGTCGCTATGGAAAGCTCTCGTACCCATGCTGATCCTCATTGCCGTGTTAA
ACTGGCTAGGTCAGATGTGGGTCGACTCGCGAATCACTGCGTTCGGTTGGTTAATCGGAATGGTGTGTAGCTGTGCCGTC
CTCTATATATGGAGACTATGGAGTACGCGAATGCTGTCACTTGCGGAATGGGAACTGATCCCGTTCGGAAGTCGTCTGCT
CGACGTGCTCGAGAAAAAGGAGAACTAA

Upstream 100 bases:

>100_bases
GGCGCCTTGAAACTGTCACTCAGCGGTCGGATGCCGCTAACAGAGCTCTTGAATGATGCCGATACTGTATTAGAAGAACT
GATGAAGCGGTTGGTGGGCG

Downstream 100 bases:

>100_bases
TATGGGTTATACAATCACGGTGGTCGGACTCGGGTCTGGTGAGTTGAATCAATTGCCGCTCGGTGTGTACCGCCATTTAA
AACAGCAACCGCTCGTCTGG

Product: polysaccharide biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 515; Mature: 515

Protein sequence:

>515_residues
MRSPSKFAQGVVLFALAGYVSKLISFAYRVPYQNLAGDFGLYAYQTVYPFAAIVASLGIYAMPVVIAKIGVGAKGTNRKL
EVLWGSFYALLLLSCMLVVTVWLFAPTLARWLGDEQLAPALRVISLSYLLMPASAVLRGAFQSRDDLRPSAWSQVLENFV
RVTVMLSLLWIGVRLGKDAYTLSQYAYGATLIGGIVSIAFLVYRARSVKFMKVRRTTFRSGMKLLLTTGFAVGFASLGIL
WMQLVDSFTIVNLMGGTYEAKVSKGVFDRGYPLVQFAILFTTTIGMANVPTLVRHYRAGHLQKTTQGLRSMIRVTTAIAG
AATIGLMGVMFFLNVALFEDESGTRALVFLATSTFAASLAIASMTCLQAIDREWVAARSMVVAMLVKSAVNAWLVPSYGI
EGAAIGTSIGFLAMAFYNFRALDRSIPLGSFRSKHYKSLWKALVPMLILIAVLNWLGQMWVDSRITAFGWLIGMVCSCAV
LYIWRLWSTRMLSLAEWELIPFGSRLLDVLEKKEN

Sequences:

>Translated_515_residues
MRSPSKFAQGVVLFALAGYVSKLISFAYRVPYQNLAGDFGLYAYQTVYPFAAIVASLGIYAMPVVIAKIGVGAKGTNRKL
EVLWGSFYALLLLSCMLVVTVWLFAPTLARWLGDEQLAPALRVISLSYLLMPASAVLRGAFQSRDDLRPSAWSQVLENFV
RVTVMLSLLWIGVRLGKDAYTLSQYAYGATLIGGIVSIAFLVYRARSVKFMKVRRTTFRSGMKLLLTTGFAVGFASLGIL
WMQLVDSFTIVNLMGGTYEAKVSKGVFDRGYPLVQFAILFTTTIGMANVPTLVRHYRAGHLQKTTQGLRSMIRVTTAIAG
AATIGLMGVMFFLNVALFEDESGTRALVFLATSTFAASLAIASMTCLQAIDREWVAARSMVVAMLVKSAVNAWLVPSYGI
EGAAIGTSIGFLAMAFYNFRALDRSIPLGSFRSKHYKSLWKALVPMLILIAVLNWLGQMWVDSRITAFGWLIGMVCSCAV
LYIWRLWSTRMLSLAEWELIPFGSRLLDVLEKKEN
>Mature_515_residues
MRSPSKFAQGVVLFALAGYVSKLISFAYRVPYQNLAGDFGLYAYQTVYPFAAIVASLGIYAMPVVIAKIGVGAKGTNRKL
EVLWGSFYALLLLSCMLVVTVWLFAPTLARWLGDEQLAPALRVISLSYLLMPASAVLRGAFQSRDDLRPSAWSQVLENFV
RVTVMLSLLWIGVRLGKDAYTLSQYAYGATLIGGIVSIAFLVYRARSVKFMKVRRTTFRSGMKLLLTTGFAVGFASLGIL
WMQLVDSFTIVNLMGGTYEAKVSKGVFDRGYPLVQFAILFTTTIGMANVPTLVRHYRAGHLQKTTQGLRSMIRVTTAIAG
AATIGLMGVMFFLNVALFEDESGTRALVFLATSTFAASLAIASMTCLQAIDREWVAARSMVVAMLVKSAVNAWLVPSYGI
EGAAIGTSIGFLAMAFYNFRALDRSIPLGSFRSKHYKSLWKALVPMLILIAVLNWLGQMWVDSRITAFGWLIGMVCSCAV
LYIWRLWSTRMLSLAEWELIPFGSRLLDVLEKKEN

Specific function: Unknown

COG id: COG2244

COG function: function code R; Membrane protein involved in the export of O-antigen and teichoic acid

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002797 [H]

Pfam domain/function: PF01943 Polysacc_synt [H]

EC number: NA

Molecular weight: Translated: 56777; Mature: 56777

Theoretical pI: Translated: 10.42; Mature: 10.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]