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The map label for this gene is rbsR [H]

Identifier: 229917245

GI number: 229917245

Start: 1488629

End: 1489606

Strand: Reverse

Name: rbsR [H]

Synonym: EAT1b_1520

Alternate gene names: 229917245

Gene position: 1489606-1488629 (Counterclockwise)

Preceding gene: 229917246

Following gene: 229917244

Centisome position: 49.66

GC content: 50.72

Gene sequence:

>978_bases
ATGGCGACCATCAAACAAGTAGCAAAACATGCGAACGTCTCAGTGGCGACCGTATCACGCGTCATGAATAAAAGCGGATA
TGTGAGCGAAGAGGCGAAAGAAGCGGTCGAAAAGGCGATTGCGGAACTGAATTATGCGCCCAACCGAGTCGCACGTTCGC
TCTATAAAAAATCGTCGAATTTGATTGGACTCATCATGCCTGATATCACGAACCCGTTCTTTCCACAGCTGGCTCGGGCG
ATTGAGGATGTCGCCAATCAACATGGGTATCAAGTCGTCTTGTGCAATACAGACGAACAACTTGAAAAAGAACAGACGTA
TTTAGTCGCCTTGCAAACGATGCACGTCGATGGCCTGATTATCACCACAAACCATTCGCACAATCCGAATTACGAGACGT
TGGATTTACCAATGGTCGCACTTGACCGAATCGTGAAAGCGGGAATCGACGCTGTTGTATCGGATGGATATGAGGGTGGA
AAGTTGGCGGCCGACACACTGTTGCAACGTGGTGCGACACGACTGGCACACATTGCCGGACCGGATCATCTCAAGACGGT
CAAACGTCGAACTGAAGGATTTGTCGAAGTAGCGGGAGAGAAGCTCGTCGGGATGACCGAGTCCACGTTCACGTTCAAAG
ACGCCTTGAAAGCGTCTCAAGAACTGTTTGATCATGCGTGGCCGTTCGATGGCATCTTTGCAGCGAACGATGTGATTGCA
GCCGCGGTGTTGCAGGAAGCAGTCCGTCGAAACATTCGTGTCCCAGAAGAGCTACAGGTCATCGGATATGACGGAATCGA
ATTAGGCGAGATGACGTCTCCGCCGCTGACGACCATCGTCCAGCCAATCTATGAGATGGGACGACTCGCGACCGAGCGAT
TGCTCGATTTGATTGAGAAGAAAGACACACGACCGAGAGAAATGCTGTTACCGGTCACGTTACTTGAACGACACACGACA
AAGCGGAAGGAGAGATAA

Upstream 100 bases:

>100_bases
TTTCAATGTGTTTTTTCATGAAATCATAAAAATCCCTTGATATGTAACCGGTTACACATTAAGATGGTTTTGTAAGCGTT
TCCAGAACGGAGGATGTCAA

Downstream 100 bases:

>100_bases
AGAATGAAACGCATTGTTGTCATTGGCAGTATATCGATGGACCTTGTCGTCACGTCCGACAAACGTCCACAAGCTGGAGA
AACGGTTATCGGTGAATCGT

Product: LacI family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 324

Protein sequence:

>325_residues
MATIKQVAKHANVSVATVSRVMNKSGYVSEEAKEAVEKAIAELNYAPNRVARSLYKKSSNLIGLIMPDITNPFFPQLARA
IEDVANQHGYQVVLCNTDEQLEKEQTYLVALQTMHVDGLIITTNHSHNPNYETLDLPMVALDRIVKAGIDAVVSDGYEGG
KLAADTLLQRGATRLAHIAGPDHLKTVKRRTEGFVEVAGEKLVGMTESTFTFKDALKASQELFDHAWPFDGIFAANDVIA
AAVLQEAVRRNIRVPEELQVIGYDGIELGEMTSPPLTTIVQPIYEMGRLATERLLDLIEKKDTRPREMLLPVTLLERHTT
KRKER

Sequences:

>Translated_325_residues
MATIKQVAKHANVSVATVSRVMNKSGYVSEEAKEAVEKAIAELNYAPNRVARSLYKKSSNLIGLIMPDITNPFFPQLARA
IEDVANQHGYQVVLCNTDEQLEKEQTYLVALQTMHVDGLIITTNHSHNPNYETLDLPMVALDRIVKAGIDAVVSDGYEGG
KLAADTLLQRGATRLAHIAGPDHLKTVKRRTEGFVEVAGEKLVGMTESTFTFKDALKASQELFDHAWPFDGIFAANDVIA
AAVLQEAVRRNIRVPEELQVIGYDGIELGEMTSPPLTTIVQPIYEMGRLATERLLDLIEKKDTRPREMLLPVTLLERHTT
KRKER
>Mature_324_residues
ATIKQVAKHANVSVATVSRVMNKSGYVSEEAKEAVEKAIAELNYAPNRVARSLYKKSSNLIGLIMPDITNPFFPQLARAI
EDVANQHGYQVVLCNTDEQLEKEQTYLVALQTMHVDGLIITTNHSHNPNYETLDLPMVALDRIVKAGIDAVVSDGYEGGK
LAADTLLQRGATRLAHIAGPDHLKTVKRRTEGFVEVAGEKLVGMTESTFTFKDALKASQELFDHAWPFDGIFAANDVIAA
AVLQEAVRRNIRVPEELQVIGYDGIELGEMTSPPLTTIVQPIYEMGRLATERLLDLIEKKDTRPREMLLPVTLLERHTTK
RKER

Specific function: Transcriptional repressor for the ribose rbsDACBK operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790194, Length=327, Percent_Identity=36.697247706422, Blast_Score=197, Evalue=8e-52,
Organism=Escherichia coli, GI1787948, Length=330, Percent_Identity=34.8484848484849, Blast_Score=182, Evalue=2e-47,
Organism=Escherichia coli, GI1790369, Length=344, Percent_Identity=32.5581395348837, Blast_Score=179, Evalue=3e-46,
Organism=Escherichia coli, GI1788474, Length=337, Percent_Identity=32.6409495548961, Blast_Score=154, Evalue=7e-39,
Organism=Escherichia coli, GI1789202, Length=331, Percent_Identity=29.9093655589124, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI48994940, Length=319, Percent_Identity=27.2727272727273, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI1786540, Length=326, Percent_Identity=29.1411042944785, Blast_Score=128, Evalue=6e-31,
Organism=Escherichia coli, GI1790715, Length=318, Percent_Identity=25.7861635220126, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI1787580, Length=314, Percent_Identity=27.3885350318471, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1789068, Length=326, Percent_Identity=27.3006134969325, Blast_Score=117, Evalue=8e-28,
Organism=Escherichia coli, GI1786268, Length=334, Percent_Identity=24.8502994011976, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI1787906, Length=332, Percent_Identity=24.3975903614458, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1789456, Length=347, Percent_Identity=24.4956772334294, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 36099; Mature: 35968

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATIKQVAKHANVSVATVSRVMNKSGYVSEEAKEAVEKAIAELNYAPNRVARSLYKKSSN
CCCHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC
LIGLIMPDITNPFFPQLARAIEDVANQHGYQVVLCNTDEQLEKEQTYLVALQTMHVDGLI
EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHEEEEECEEE
ITTNHSHNPNYETLDLPMVALDRIVKAGIDAVVSDGYEGGKLAADTLLQRGATRLAHIAG
EEECCCCCCCCCEECCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC
PDHLKTVKRRTEGFVEVAGEKLVGMTESTFTFKDALKASQELFDHAWPFDGIFAANDVIA
HHHHHHHHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
AAVLQEAVRRNIRVPEELQVIGYDGIELGEMTSPPLTTIVQPIYEMGRLATERLLDLIEK
HHHHHHHHHHCCCCCHHHEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
KDTRPREMLLPVTLLERHTTKRKER
CCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ATIKQVAKHANVSVATVSRVMNKSGYVSEEAKEAVEKAIAELNYAPNRVARSLYKKSSN
CCHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC
LIGLIMPDITNPFFPQLARAIEDVANQHGYQVVLCNTDEQLEKEQTYLVALQTMHVDGLI
EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHEEEEECEEE
ITTNHSHNPNYETLDLPMVALDRIVKAGIDAVVSDGYEGGKLAADTLLQRGATRLAHIAG
EEECCCCCCCCCEECCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC
PDHLKTVKRRTEGFVEVAGEKLVGMTESTFTFKDALKASQELFDHAWPFDGIFAANDVIA
HHHHHHHHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
AAVLQEAVRRNIRVPEELQVIGYDGIELGEMTSPPLTTIVQPIYEMGRLATERLLDLIEK
HHHHHHHHHHCCCCCHHHEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
KDTRPREMLLPVTLLERHTTKRKER
CCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]