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The map label for this gene is rbsD

Identifier: 229917243

GI number: 229917243

Start: 1487352

End: 1487741

Strand: Reverse

Name: rbsD

Synonym: EAT1b_1518

Alternate gene names: 229917243

Gene position: 1487741-1487352 (Counterclockwise)

Preceding gene: 229917244

Following gene: 229917242

Centisome position: 49.59

GC content: 49.49

Gene sequence:

>390_bases
ATGAAAAAACAAGGAATTTTGAATAGTCATTTAGCAAAAATCTTTGCCGACCTCGGGCATACGGATCGCGTCGTCATCGC
CGATTGTGGGCTACCGATTCCAGACGGGGTCAAGCGGGTCGATCTTAGTCTCCGCATCGGGGAACCTTCCTTTCTTGAGG
TGCTCGATGTCGTCGAATCAGATTTGGTCGTAGAGCGCATCACGATTGCTGAGGAAATCCTCACACACAACTCGACGATT
GCGGATTCACTGAAAGAACGGTACACGAGCATCGACATGTGTTCGCATGAAGACTTCAAACGGGAGGTCGCAAAAGCGAA
AGTGGTCATTCGAACTGGGGAAGCGACACCTTACGCCAACGTCATCTTACATGCCGGGGTCATTTTTTAA

Upstream 100 bases:

>100_bases
GGTTTGCCGTAGTCGCATCCGGCATGAGTGTCGAAGGCTTCGGTGCACAAGGTGGTATGCCGACACGACAAGATGTACAA
CAACGATTGGAGCGCGTGTG

Downstream 100 bases:

>100_bases
GGGGGGATTCGATGCATATTCAGTTGAAAGGCATCCATAAGTCGTTCGGGCCAGTCTCCGTCTTAAAAGGAGTCGATTTC
GAACTGTTGCCTGGAGAGAT

Product: RbsD or FucU transport

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 129; Mature: 129

Protein sequence:

>129_residues
MKKQGILNSHLAKIFADLGHTDRVVIADCGLPIPDGVKRVDLSLRIGEPSFLEVLDVVESDLVVERITIAEEILTHNSTI
ADSLKERYTSIDMCSHEDFKREVAKAKVVIRTGEATPYANVILHAGVIF

Sequences:

>Translated_129_residues
MKKQGILNSHLAKIFADLGHTDRVVIADCGLPIPDGVKRVDLSLRIGEPSFLEVLDVVESDLVVERITIAEEILTHNSTI
ADSLKERYTSIDMCSHEDFKREVAKAKVVIRTGEATPYANVILHAGVIF
>Mature_129_residues
MKKQGILNSHLAKIFADLGHTDRVVIADCGLPIPDGVKRVDLSLRIGEPSFLEVLDVVESDLVVERITIAEEILTHNSTI
ADSLKERYTSIDMCSHEDFKREVAKAKVVIRTGEATPYANVILHAGVIF

Specific function: Catalyzes the interconversion of beta-pyran and beta- furan forms of D-ribose

COG id: COG1869

COG function: function code G; ABC-type ribose transport system, auxiliary component

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbsD / fucU family. RbsD subfamily

Homologues:

Organism=Escherichia coli, GI87082327, Length=139, Percent_Identity=43.8848920863309, Blast_Score=122, Evalue=6e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBSD_EXISA (C4KZD1)

Other databases:

- EMBL:   CP001615
- RefSeq:   YP_002885889.1
- ProteinModelPortal:   C4KZD1
- GeneID:   7869834
- GenomeReviews:   CP001615_GR
- KEGG:   eat:EAT1b_1518
- OMA:   RAVIRTG
- GO:   GO:0005737
- HAMAP:   MF_01661
- InterPro:   IPR023064
- InterPro:   IPR007721

Pfam domain/function: PF05025 RbsD_FucU; SSF102546 RbsD_FucU

EC number: NA

Molecular weight: Translated: 14239; Mature: 14239

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: NA

Important sites: ACT_SITE 20-20 BINDING 28-28 BINDING 96-96

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKQGILNSHLAKIFADLGHTDRVVIADCGLPIPDGVKRVDLSLRIGEPSFLEVLDVVES
CCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEEEEEEECCCHHHHHHHHHHH
DLVVERITIAEEILTHNSTIADSLKERYTSIDMCSHEDFKREVAKAKVVIRTGEATPYAN
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHEEEEECCCCCCHHH
VILHAGVIF
HHHHCCCCC
>Mature Secondary Structure
MKKQGILNSHLAKIFADLGHTDRVVIADCGLPIPDGVKRVDLSLRIGEPSFLEVLDVVES
CCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEEEEEEECCCHHHHHHHHHHH
DLVVERITIAEEILTHNSTIADSLKERYTSIDMCSHEDFKREVAKAKVVIRTGEATPYAN
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHEEEEECCCCCCHHH
VILHAGVIF
HHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA