Click here to switch to the map view.

The map label for this gene is ydiF [H]

Identifier: 229917225

GI number: 229917225

Start: 1465224

End: 1467068

Strand: Direct

Name: ydiF [H]

Synonym: EAT1b_1500

Alternate gene names: 229917225

Gene position: 1465224-1467068 (Clockwise)

Preceding gene: 229917223

Following gene: 229917228

Centisome position: 48.84

GC content: 49.49

Gene sequence:

>1845_bases
ATGTTGATCGATCTTCAACACATTCAAAAACAATACGGCGGGCACGCCGTTCTCACAGATGCGAATTTATTCTTGAACGA
AAACGAACGAGTCGGTCTTGTCGGCCGAAACGGCAGTGGCAAAACGACGCTGTTACGAATCCTTGTCGGCTCTGAAGAGC
ATGACGCCGGTACGATTTACCGCCGACAACGACTCTCTATCGGCTATTTGGTGCAGCTTCCTGACTACCCTGGACGCAGT
GGTCGTGACGTCCTCTATACTGCTTTTGAGGAAGTGACTCGCCTGAGTGAAAAAATGTCTTCCCTCGAGCAAGAGATGGC
GACGTCCGAACAGCTAGAACGCCTTCTCGAATCATACGGTGCCATTCAAGAACAATTCGAACATGCGGGTGGATATGTTT
ACGAGTCAAAAATCAGCGCAATGATTGATGGACTCAAATTGACCTCATTCGTGGACCAACCGTTCGATACGCTAAGCGGG
GGCGAGCGTACAAAAATCGGTCTCGCCCTGGCGCTCCTTCAAGAACCAGAACTACTCATTTTGGACGAACCGACGAACCA
TCTAGATTTAGAAGCGATGACGTGGCTCGAATCCTATTTACAGGATTACGATTCAGCGCTCCTCATCGTCTCCCATGACC
GGGTCTTCTTAGATGCGGTCGCCACGCGAATCGTCGAGTGCGAGGATGGAGAATTGACGAGTTATCCTGGGAATTATACG
GACTTCGTTGCCCAAAAAGAAAAACAGTTGCTTGACCAGTTTCACGCTTACACGGAGCAACAGAAGAAAATCAAAAAAAT
GAAGGAAACGATCCGGCAGTTGCGGCAATGGGCCAACGAGGGCAATCCGCCTAATGAAAAGTTCTATCGTCGCGCCAAAT
CGATGGAAAAGGCTCTCGAACGAATTGAACGAATCAAGCGACCACAACTCGAAGCCGAGCAACCGAATATCCAGTTCACG
ACGAACGGGCGAACCGGGCGCGACGTCTTCGAAGTAAATGACGTGACACTTATCTATGATCGTCCTCTATTTGAAGACGT
GCACTTCTACACAGGGCACGGGGAACGCGTCGCCATCGTCGGACCGAACGGGAGTGGAAAGTCTTCGCTTTTGAAAATAT
TGCTCGGTGAAGTTATCCCGCAAGCCGGAACCGTAAGGCGAGCCGACCAAGCCAAAATCGGCTATCTATCGCAACACATC
ACATTCGACGAATCTCATCGCTTAATCGAGGCGTTTCGGGATCGGATTGCAGTCGATGAAGGCAAAGCGAGACACCTTCT
CGCTCAATTTCTGTTTTACGGCGCGAGTGTGTTTAAACCGGTCACGAATTTGAGCGGCGGGGAGAAGATGCGACTCATGC
TTGCCATCCTCGTCCATGAAGAAATCAATGTCCTTGTCCTAGATGAGCCGACGAACCACCTCGATATCGAATCGAGAGAG
GCACTTGAAGAGGCACTCGAACGTTTCCCTGGAACGGTCGTTACGGTTTCCCATGACCGCTACTTCTTGAATAAGCTGTT
CCCTATCACGTATTGGCTCGACGGGACGATGACACGTTTCGAAGGTAACGTCGCCTATGCCCTCGATAAACGTGGACAGG
AATCGAAAGATGAACCTAAAACGGAACACATCAAACGATCAAAATCGCTGAAGCAGACGAAACCCGCTCCATCTACGGTT
GATGAGGAAACTCACCTGACCCAATTAGAGACAGAACATCGGGCACTGCTCCAACGGATGAATGAATTGGATGACCTTGA
TGAATTGATGGCGTTACAACGACAAGTTGATGCATTGCAAAAAGAAATCGATGACGTGATGACACGTTTGCTCGAATCTT
TATAA

Upstream 100 bases:

>100_bases
GACATTGCTGAATATACGACAAAGCGCCTCTCTCTTTCTAAACCGAGCGCTTCTTTGCGTTCGGTTTTTTGATAGGCCCT
AACCTTAGGAGGAACCTATT

Downstream 100 bases:

>100_bases
CCTAATATAGAGAAGCGGCACCCAATCAAGGGCGCCGCTTCTTTTGCTCGAATCGAATCTGTATGAAATAGCCGATGACC
GCGATAGCCATCAACCCCAT

Product: ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 614; Mature: 614

Protein sequence:

>614_residues
MLIDLQHIQKQYGGHAVLTDANLFLNENERVGLVGRNGSGKTTLLRILVGSEEHDAGTIYRRQRLSIGYLVQLPDYPGRS
GRDVLYTAFEEVTRLSEKMSSLEQEMATSEQLERLLESYGAIQEQFEHAGGYVYESKISAMIDGLKLTSFVDQPFDTLSG
GERTKIGLALALLQEPELLILDEPTNHLDLEAMTWLESYLQDYDSALLIVSHDRVFLDAVATRIVECEDGELTSYPGNYT
DFVAQKEKQLLDQFHAYTEQQKKIKKMKETIRQLRQWANEGNPPNEKFYRRAKSMEKALERIERIKRPQLEAEQPNIQFT
TNGRTGRDVFEVNDVTLIYDRPLFEDVHFYTGHGERVAIVGPNGSGKSSLLKILLGEVIPQAGTVRRADQAKIGYLSQHI
TFDESHRLIEAFRDRIAVDEGKARHLLAQFLFYGASVFKPVTNLSGGEKMRLMLAILVHEEINVLVLDEPTNHLDIESRE
ALEEALERFPGTVVTVSHDRYFLNKLFPITYWLDGTMTRFEGNVAYALDKRGQESKDEPKTEHIKRSKSLKQTKPAPSTV
DEETHLTQLETEHRALLQRMNELDDLDELMALQRQVDALQKEIDDVMTRLLESL

Sequences:

>Translated_614_residues
MLIDLQHIQKQYGGHAVLTDANLFLNENERVGLVGRNGSGKTTLLRILVGSEEHDAGTIYRRQRLSIGYLVQLPDYPGRS
GRDVLYTAFEEVTRLSEKMSSLEQEMATSEQLERLLESYGAIQEQFEHAGGYVYESKISAMIDGLKLTSFVDQPFDTLSG
GERTKIGLALALLQEPELLILDEPTNHLDLEAMTWLESYLQDYDSALLIVSHDRVFLDAVATRIVECEDGELTSYPGNYT
DFVAQKEKQLLDQFHAYTEQQKKIKKMKETIRQLRQWANEGNPPNEKFYRRAKSMEKALERIERIKRPQLEAEQPNIQFT
TNGRTGRDVFEVNDVTLIYDRPLFEDVHFYTGHGERVAIVGPNGSGKSSLLKILLGEVIPQAGTVRRADQAKIGYLSQHI
TFDESHRLIEAFRDRIAVDEGKARHLLAQFLFYGASVFKPVTNLSGGEKMRLMLAILVHEEINVLVLDEPTNHLDIESRE
ALEEALERFPGTVVTVSHDRYFLNKLFPITYWLDGTMTRFEGNVAYALDKRGQESKDEPKTEHIKRSKSLKQTKPAPSTV
DEETHLTQLETEHRALLQRMNELDDLDELMALQRQVDALQKEIDDVMTRLLESL
>Mature_614_residues
MLIDLQHIQKQYGGHAVLTDANLFLNENERVGLVGRNGSGKTTLLRILVGSEEHDAGTIYRRQRLSIGYLVQLPDYPGRS
GRDVLYTAFEEVTRLSEKMSSLEQEMATSEQLERLLESYGAIQEQFEHAGGYVYESKISAMIDGLKLTSFVDQPFDTLSG
GERTKIGLALALLQEPELLILDEPTNHLDLEAMTWLESYLQDYDSALLIVSHDRVFLDAVATRIVECEDGELTSYPGNYT
DFVAQKEKQLLDQFHAYTEQQKKIKKMKETIRQLRQWANEGNPPNEKFYRRAKSMEKALERIERIKRPQLEAEQPNIQFT
TNGRTGRDVFEVNDVTLIYDRPLFEDVHFYTGHGERVAIVGPNGSGKSSLLKILLGEVIPQAGTVRRADQAKIGYLSQHI
TFDESHRLIEAFRDRIAVDEGKARHLLAQFLFYGASVFKPVTNLSGGEKMRLMLAILVHEEINVLVLDEPTNHLDIESRE
ALEEALERFPGTVVTVSHDRYFLNKLFPITYWLDGTMTRFEGNVAYALDKRGQESKDEPKTEHIKRSKSLKQTKPAPSTV
DEETHLTQLETEHRALLQRMNELDDLDELMALQRQVDALQKEIDDVMTRLLESL

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=538, Percent_Identity=32.1561338289963, Blast_Score=236, Evalue=5e-62,
Organism=Homo sapiens, GI10947137, Length=551, Percent_Identity=30.8529945553539, Blast_Score=211, Evalue=2e-54,
Organism=Homo sapiens, GI27881506, Length=551, Percent_Identity=30.8529945553539, Blast_Score=211, Evalue=2e-54,
Organism=Homo sapiens, GI10947135, Length=524, Percent_Identity=33.587786259542, Blast_Score=211, Evalue=2e-54,
Organism=Homo sapiens, GI69354671, Length=524, Percent_Identity=33.587786259542, Blast_Score=211, Evalue=2e-54,
Organism=Escherichia coli, GI2367384, Length=520, Percent_Identity=33.6538461538462, Blast_Score=266, Evalue=3e-72,
Organism=Escherichia coli, GI1787182, Length=550, Percent_Identity=32.9090909090909, Blast_Score=260, Evalue=2e-70,
Organism=Escherichia coli, GI1789751, Length=569, Percent_Identity=31.8101933216169, Blast_Score=257, Evalue=2e-69,
Organism=Escherichia coli, GI1787041, Length=565, Percent_Identity=32.212389380531, Blast_Score=250, Evalue=2e-67,
Organism=Escherichia coli, GI1788165, Length=168, Percent_Identity=31.547619047619, Blast_Score=80, Evalue=6e-16,
Organism=Escherichia coli, GI1790467, Length=255, Percent_Identity=25.8823529411765, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1789891, Length=224, Percent_Identity=28.125, Blast_Score=76, Evalue=6e-15,
Organism=Escherichia coli, GI87081709, Length=258, Percent_Identity=24.4186046511628, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI1789873, Length=241, Percent_Identity=26.1410788381743, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI48994883, Length=288, Percent_Identity=26.0416666666667, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI1787029, Length=264, Percent_Identity=26.1363636363636, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1789864, Length=235, Percent_Identity=24.6808510638298, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1790739, Length=194, Percent_Identity=29.3814432989691, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787500, Length=209, Percent_Identity=25.8373205741627, Blast_Score=64, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17555318, Length=531, Percent_Identity=29.9435028248588, Blast_Score=232, Evalue=4e-61,
Organism=Caenorhabditis elegans, GI17559834, Length=515, Percent_Identity=32.2330097087379, Blast_Score=227, Evalue=2e-59,
Organism=Caenorhabditis elegans, GI17553372, Length=539, Percent_Identity=31.7254174397032, Blast_Score=195, Evalue=5e-50,
Organism=Caenorhabditis elegans, GI71983510, Length=258, Percent_Identity=25.1937984496124, Blast_Score=73, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI71983516, Length=258, Percent_Identity=25.1937984496124, Blast_Score=73, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI71983523, Length=258, Percent_Identity=25.1937984496124, Blast_Score=73, Evalue=5e-13,
Organism=Saccharomyces cerevisiae, GI6320874, Length=542, Percent_Identity=32.4723247232472, Blast_Score=246, Evalue=9e-66,
Organism=Saccharomyces cerevisiae, GI6321121, Length=553, Percent_Identity=31.8264014466546, Blast_Score=210, Evalue=5e-55,
Organism=Saccharomyces cerevisiae, GI6325030, Length=401, Percent_Identity=30.4239401496259, Blast_Score=152, Evalue=2e-37,
Organism=Saccharomyces cerevisiae, GI6323278, Length=403, Percent_Identity=25.8064516129032, Blast_Score=137, Evalue=6e-33,
Organism=Saccharomyces cerevisiae, GI6324314, Length=397, Percent_Identity=26.7002518891688, Blast_Score=134, Evalue=3e-32,
Organism=Drosophila melanogaster, GI24666836, Length=535, Percent_Identity=34.018691588785, Blast_Score=244, Evalue=2e-64,
Organism=Drosophila melanogaster, GI24642252, Length=532, Percent_Identity=31.390977443609, Blast_Score=236, Evalue=3e-62,
Organism=Drosophila melanogaster, GI18859989, Length=532, Percent_Identity=31.390977443609, Blast_Score=236, Evalue=3e-62,
Organism=Drosophila melanogaster, GI24641342, Length=549, Percent_Identity=32.0582877959927, Blast_Score=233, Evalue=3e-61,
Organism=Drosophila melanogaster, GI24643674, Length=301, Percent_Identity=24.2524916943522, Blast_Score=70, Evalue=5e-12,
Organism=Drosophila melanogaster, GI28574259, Length=177, Percent_Identity=30.5084745762712, Blast_Score=68, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 70100; Mature: 70100

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIDLQHIQKQYGGHAVLTDANLFLNENERVGLVGRNGSGKTTLLRILVGSEEHDAGTIY
CEECHHHHHHHHCCEEEEEECEEEECCCCEEEEEECCCCCCEEEEEEEECCCCCCCHHHH
RRQRLSIGYLVQLPDYPGRSGRDVLYTAFEEVTRLSEKMSSLEQEMATSEQLERLLESYG
HHHHCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AIQEQFEHAGGYVYESKISAMIDGLKLTSFVDQPFDTLSGGERTKIGLALALLQEPELLI
HHHHHHHHCCCEEEHHHHHHHHCCHHHHHHHCCCHHHCCCCCCHHHHHHHHHHCCCCEEE
LDEPTNHLDLEAMTWLESYLQDYDSALLIVSHDRVFLDAVATRIVECEDGELTSYPGNYT
EECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHEECCCCCCCCCCCCHH
DFVAQKEKQLLDQFHAYTEQQKKIKKMKETIRQLRQWANEGNPPNEKFYRRAKSMEKALE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
RIERIKRPQLEAEQPNIQFTTNGRTGRDVFEVNDVTLIYDRPLFEDVHFYTGHGERVAIV
HHHHHCCCCCCCCCCCEEEEECCCCCCCEEEECCEEEEECCCCHHCCCEEECCCCEEEEE
GPNGSGKSSLLKILLGEVIPQAGTVRRADQAKIGYLSQHITFDESHRLIEAFRDRIAVDE
CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCC
GKARHLLAQFLFYGASVFKPVTNLSGGEKMRLMLAILVHEEINVLVLDEPTNHLDIESRE
CHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHH
ALEEALERFPGTVVTVSHDRYFLNKLFPITYWLDGTMTRFEGNVAYALDKRGQESKDEPK
HHHHHHHHCCCEEEEEECCHHHHHHHCHHEEEECCCEEEECCCEEEEECCCCCCCCCCCH
TEHIKRSKSLKQTKPAPSTVDEETHLTQLETEHRALLQRMNELDDLDELMALQRQVDALQ
HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
KEIDDVMTRLLESL
HHHHHHHHHHHHHC
>Mature Secondary Structure
MLIDLQHIQKQYGGHAVLTDANLFLNENERVGLVGRNGSGKTTLLRILVGSEEHDAGTIY
CEECHHHHHHHHCCEEEEEECEEEECCCCEEEEEECCCCCCEEEEEEEECCCCCCCHHHH
RRQRLSIGYLVQLPDYPGRSGRDVLYTAFEEVTRLSEKMSSLEQEMATSEQLERLLESYG
HHHHCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AIQEQFEHAGGYVYESKISAMIDGLKLTSFVDQPFDTLSGGERTKIGLALALLQEPELLI
HHHHHHHHCCCEEEHHHHHHHHCCHHHHHHHCCCHHHCCCCCCHHHHHHHHHHCCCCEEE
LDEPTNHLDLEAMTWLESYLQDYDSALLIVSHDRVFLDAVATRIVECEDGELTSYPGNYT
EECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHEECCCCCCCCCCCCHH
DFVAQKEKQLLDQFHAYTEQQKKIKKMKETIRQLRQWANEGNPPNEKFYRRAKSMEKALE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
RIERIKRPQLEAEQPNIQFTTNGRTGRDVFEVNDVTLIYDRPLFEDVHFYTGHGERVAIV
HHHHHCCCCCCCCCCCEEEEECCCCCCCEEEECCEEEEECCCCHHCCCEEECCCCEEEEE
GPNGSGKSSLLKILLGEVIPQAGTVRRADQAKIGYLSQHITFDESHRLIEAFRDRIAVDE
CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCC
GKARHLLAQFLFYGASVFKPVTNLSGGEKMRLMLAILVHEEINVLVLDEPTNHLDIESRE
CHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHH
ALEEALERFPGTVVTVSHDRYFLNKLFPITYWLDGTMTRFEGNVAYALDKRGQESKDEPK
HHHHHHHHCCCEEEEEECCHHHHHHHCHHEEEECCCEEEECCCEEEEECCCCCCCCCCCH
TEHIKRSKSLKQTKPAPSTVDEETHLTQLETEHRALLQRMNELDDLDELMALQRQVDALQ
HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
KEIDDVMTRLLESL
HHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]