| Definition | Exiguobacterium sp. AT1b, complete genome. |
|---|---|
| Accession | NC_012673 |
| Length | 2,999,895 |
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The map label for this gene is yfeW [C]
Identifier: 229917206
GI number: 229917206
Start: 1453027
End: 1454043
Strand: Direct
Name: yfeW [C]
Synonym: EAT1b_1481
Alternate gene names: 229917206
Gene position: 1453027-1454043 (Clockwise)
Preceding gene: 229917204
Following gene: 229917207
Centisome position: 48.44
GC content: 47.2
Gene sequence:
>1017_bases ATGACACATTTCACACATCCACCGATCGACGAGACATGTTCGGGTGTCTATTTGGTCACGAATCGAAACGGATCGATCCA CCAGTCATACGGCTATGCGAATCGCTCAGAACAGATTCAACATGACGTGACGACACGGTTCGGAATCGCGTCCGGTTGCA AGCTGTTTACAGCAATCGCGATTTCTCAGTTAGTCGAGCAAGGGAAACTATCCTTCTCCACCTCGCTTGACTCGTTTCAA ACATTCGACTTACCTCATCTGTCACCAAACGTCACCGTGCATCAACTGTTGACGCACACGTCGGGAATCCCTGACTATTT TGATGAATCCGTCTCTGATGACTTTGAAGCGCTATGGCATGATATTCCGATGTATCGACTTCAACAGTTACGTGATTTTT TACCGCTGTTTCAACAAAAATCCATGAAAGACGAGCCGGGGTCTCGATTCTCCTACAACAATGCGGGGTATATTCTGTTA GGGTTGATTGTGGAAGAAGTGACCGGTCAATCTTTCACCGATTACGTCGAACAATCGATTTTTCAGCCTGCCGGTATGAC CGATTCCGGATACTTTTCACTCGATGCCTTGCCTTCTAAAACAGCACTCGGTTATATCGACCACCCGGACGGCACATGGC GTACAAACCAATATGCGATTCCAATCAAGGGAGGAGCAGATGGCGGAGCTTATGTGACCGTTCAAGATATGACCCGTTTT TGGAAAGCATTGTTTTCACATCAGCTACTGGACGCCGCATCCACCTCCCTCCTTCTCACACCACATGTGATGATCAATGA CCGCGGCGGAAGTTATGGATACGGACTTTGGATTCAACATCACGCGTCGGGAGACGTCTATAAATATCATGTGATGGGAT ATGACCCCGGTGTCAGTTTCCATTCGGGTTACTATCCAGAAATCGATACCATCTCGGTTATTTGTTCAAATCAATCAGAT GGGGCGTTCGACATGATGAAACAGATTGAAATACAGATTGGAGAGCGGCTCGAATGA
Upstream 100 bases:
>100_bases TTTGGTAAATGTTTTTTTGAAAATTGAGTAAATTTCAGAGAGATTGTGACGGACATGATATAGTCGACTTATTGAATCAC TCAATACACGGAGGTTTCTC
Downstream 100 bases:
>100_bases ACATTCGGAATTATATGGAATCAGACTTTGACTCGATTCAACAACTCAATCACGACGAAGGTTGGAACCAATTGGTAGAA CGTGACGCATTGACCCGTGA
Product: beta-lactamase
Products: NA
Alternate protein names: DD-carboxypeptidase; DD-peptidase [H]
Number of amino acids: Translated: 338; Mature: 337
Protein sequence:
>338_residues MTHFTHPPIDETCSGVYLVTNRNGSIHQSYGYANRSEQIQHDVTTRFGIASGCKLFTAIAISQLVEQGKLSFSTSLDSFQ TFDLPHLSPNVTVHQLLTHTSGIPDYFDESVSDDFEALWHDIPMYRLQQLRDFLPLFQQKSMKDEPGSRFSYNNAGYILL GLIVEEVTGQSFTDYVEQSIFQPAGMTDSGYFSLDALPSKTALGYIDHPDGTWRTNQYAIPIKGGADGGAYVTVQDMTRF WKALFSHQLLDAASTSLLLTPHVMINDRGGSYGYGLWIQHHASGDVYKYHVMGYDPGVSFHSGYYPEIDTISVICSNQSD GAFDMMKQIEIQIGERLE
Sequences:
>Translated_338_residues MTHFTHPPIDETCSGVYLVTNRNGSIHQSYGYANRSEQIQHDVTTRFGIASGCKLFTAIAISQLVEQGKLSFSTSLDSFQ TFDLPHLSPNVTVHQLLTHTSGIPDYFDESVSDDFEALWHDIPMYRLQQLRDFLPLFQQKSMKDEPGSRFSYNNAGYILL GLIVEEVTGQSFTDYVEQSIFQPAGMTDSGYFSLDALPSKTALGYIDHPDGTWRTNQYAIPIKGGADGGAYVTVQDMTRF WKALFSHQLLDAASTSLLLTPHVMINDRGGSYGYGLWIQHHASGDVYKYHVMGYDPGVSFHSGYYPEIDTISVICSNQSD GAFDMMKQIEIQIGERLE >Mature_337_residues THFTHPPIDETCSGVYLVTNRNGSIHQSYGYANRSEQIQHDVTTRFGIASGCKLFTAIAISQLVEQGKLSFSTSLDSFQT FDLPHLSPNVTVHQLLTHTSGIPDYFDESVSDDFEALWHDIPMYRLQQLRDFLPLFQQKSMKDEPGSRFSYNNAGYILLG LIVEEVTGQSFTDYVEQSIFQPAGMTDSGYFSLDALPSKTALGYIDHPDGTWRTNQYAIPIKGGADGGAYVTVQDMTRFW KALFSHQLLDAASTSLLLTPHVMINDRGGSYGYGLWIQHHASGDVYKYHVMGYDPGVSFHSGYYPEIDTISVICSNQSDG AFDMMKQIEIQIGERLE
Specific function: Catalyzes distinct carboxypeptidation and transpeptidation reactions during the last stages of wall peptidoglycan synthesis. Mistaking a beta-lactam antibiotic molecule for a normal substrate (i.e., a D-alanyl-D-alanine- terminated peptide), it becomes im
COG id: COG1680
COG function: function code V; Beta-lactamase class C and other penicillin binding proteins
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S12 family [H]
Homologues:
Organism=Escherichia coli, GI87082101, Length=178, Percent_Identity=28.6516853932584, Blast_Score=63, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17550934, Length=168, Percent_Identity=29.1666666666667, Blast_Score=65, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001466 [H]
Pfam domain/function: PF00144 Beta-lactamase [H]
EC number: =3.4.16.4 [H]
Molecular weight: Translated: 37824; Mature: 37692
Theoretical pI: Translated: 4.87; Mature: 4.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTHFTHPPIDETCSGVYLVTNRNGSIHQSYGYANRSEQIQHDVTTRFGIASGCKLFTAIA CCCCCCCCCCHHCCCEEEEECCCCCEECCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHH ISQLVEQGKLSFSTSLDSFQTFDLPHLSPNVTVHQLLTHTSGIPDYFDESVSDDFEALWH HHHHHHHCCCEEECCCCCCEECCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHH DIPMYRLQQLRDFLPLFQQKSMKDEPGSRFSYNNAGYILLGLIVEEVTGQSFTDYVEQSI HCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEHHHHHHHHHCCCHHHHHHHHHH FQPAGMTDSGYFSLDALPSKTALGYIDHPDGTWRTNQYAIPIKGGADGGAYVTVQDMTRF CCCCCCCCCCCEEECCCCCCCEEEEEECCCCCEECCEEEEEECCCCCCCCEEEHHHHHHH WKALFSHQLLDAASTSLLLTPHVMINDRGGSYGYGLWIQHHASGDVYKYHVMGYDPGVSF HHHHHHHHHHHHCCCEEEEECEEEEECCCCCEEEEEEEEECCCCCEEEEEEEEECCCCCC HSGYYPEIDTISVICSNQSDGAFDMMKQIEIQIGERLE CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCC >Mature Secondary Structure THFTHPPIDETCSGVYLVTNRNGSIHQSYGYANRSEQIQHDVTTRFGIASGCKLFTAIA CCCCCCCCCHHCCCEEEEECCCCCEECCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHH ISQLVEQGKLSFSTSLDSFQTFDLPHLSPNVTVHQLLTHTSGIPDYFDESVSDDFEALWH HHHHHHHCCCEEECCCCCCEECCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHH DIPMYRLQQLRDFLPLFQQKSMKDEPGSRFSYNNAGYILLGLIVEEVTGQSFTDYVEQSI HCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEHHHHHHHHHCCCHHHHHHHHHH FQPAGMTDSGYFSLDALPSKTALGYIDHPDGTWRTNQYAIPIKGGADGGAYVTVQDMTRF CCCCCCCCCCCEEECCCCCCCEEEEEECCCCCEECCEEEEEECCCCCCCCEEEHHHHHHH WKALFSHQLLDAASTSLLLTPHVMINDRGGSYGYGLWIQHHASGDVYKYHVMGYDPGVSF HHHHHHHHHHHHCCCEEEEECEEEEECCCCCEEEEEEEEECCCCCEEEEEEEEECCCCCC HSGYYPEIDTISVICSNQSDGAFDMMKQIEIQIGERLE CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 3830154; 7925404; 3030739; 2175384; 2386365; 3997832; 7490745 [H]