Click here to switch to the map view.

The map label for this gene is yuxH [H]

Identifier: 229917033

GI number: 229917033

Start: 1282856

End: 1284046

Strand: Reverse

Name: yuxH [H]

Synonym: EAT1b_1307

Alternate gene names: 229917033

Gene position: 1284046-1282856 (Counterclockwise)

Preceding gene: 229917034

Following gene: 229917032

Centisome position: 42.8

GC content: 46.68

Gene sequence:

>1191_bases
ATGAAAGTTTACGTTGCGCGACAACCAATTTTTGACCAACAATTACGCGTTTGCGGCTACGAATTGTTATATCGCCGCAG
CGAAAATAATATTTTTGAGAATGTAGATGATTCGTTAGCAACGGCTGACGTCATTCATAACGCTTACCTTGTGTTCAATT
TTCGGGAATTGACAGAAGGGACGCGTGCGTTCATCAACTTCCCTCAGACGTTGATTGAAGGGGAAGTGCCTTCGTTGCTA
CCACGTCAATCGCTCGTCGTCGAAGTGCTCGAACATGTCGAACCGACGGAAAAGGTATTGCAGTCTCTCCGCTCGTTGAG
ACGTCAAGGTTATACAATTGCATTGGATGATTTCGTATTTGAAGAGAAGTATCGCCCATTGATTGGACTCGCCGACATCA
TCAAAATCGACTATCAAGCGACCCCGGTAGACCAGCAGCAAAAATTGATTGATGCGCTCGGACACCGAGTCGAATTTTTG
GCGGAAAAAATCGAGACACCCGCAGAGTACGAGATTGCGAAACGACTCGGATATAAGATGTTTCAAGGATACTTCTTTAG
TCGGCCCATCGTGGTGCATGGGGCCGAAGTCCATCCGTTACGTCACACGCTCATTGAAATGTTGAAAGAGCTCGATCGTC
CGGAACCGAGCTTCCGACGGATCTCATCGCAAATTGAGCGAAGTGTCGACTTATCCTATAAGATGCTCCGCACGGTCAAT
ACGGTGTATCAAAAAGGTCGACATACCATTCAATCCATCGAGCAAGCCGTCGCACGAATCGGACTAGATGAGTTGAAACG
ATGGTCGTATTTGATGCTCTTACGGGAGATGCAGACCTCTGAATCGAAAGAACTGATCAAACAGAGTGTCATCCGCGGAA
AAATGATGGAGTTGATTGCGGAGGATACATTGACAGATGTATTACCGTTTGATGCATTCATTACAGGGATCTTCTCATCA
CTCGACGTCATTCTCGATGAGGCGATGCAAACGTTGATTGCAGAGCTTCCGGTGGCGCCTCCTGTTAAGGCAGCGTTACT
CGGTGAACAGAATGGTTTGCGAAAGTTGTTAGAGGATGTGATCGCCTACGAACAGTTGACGATTCCACTCCATAACACAG
ATTCGGATTGGTCTCAATATTACGTCGAAGCGATTCGATGGTCTCGTAGCCTTGACGAATCGATTGAATAA

Upstream 100 bases:

>100_bases
TATGGGTCATTTGTCGTGCTTCTAAATGCCGGGACTAGTAAAAAATATATGGGAGAAGACCGATAATAAAGGTGGGAACT
ACCGTAAAGGAGATTAGGGA

Downstream 100 bases:

>100_bases
TGTTTGAAATATGTGAGGGGCGTCAATTACTGTAGTAAGGCCTTACTGCTGATGACGTCCCTTTTGGTGTGCTTGTAGAG
AAAGTGAGTTGATCGAATGG

Product: diguanylate phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 396

Protein sequence:

>396_residues
MKVYVARQPIFDQQLRVCGYELLYRRSENNIFENVDDSLATADVIHNAYLVFNFRELTEGTRAFINFPQTLIEGEVPSLL
PRQSLVVEVLEHVEPTEKVLQSLRSLRRQGYTIALDDFVFEEKYRPLIGLADIIKIDYQATPVDQQQKLIDALGHRVEFL
AEKIETPAEYEIAKRLGYKMFQGYFFSRPIVVHGAEVHPLRHTLIEMLKELDRPEPSFRRISSQIERSVDLSYKMLRTVN
TVYQKGRHTIQSIEQAVARIGLDELKRWSYLMLLREMQTSESKELIKQSVIRGKMMELIAEDTLTDVLPFDAFITGIFSS
LDVILDEAMQTLIAELPVAPPVKAALLGEQNGLRKLLEDVIAYEQLTIPLHNTDSDWSQYYVEAIRWSRSLDESIE

Sequences:

>Translated_396_residues
MKVYVARQPIFDQQLRVCGYELLYRRSENNIFENVDDSLATADVIHNAYLVFNFRELTEGTRAFINFPQTLIEGEVPSLL
PRQSLVVEVLEHVEPTEKVLQSLRSLRRQGYTIALDDFVFEEKYRPLIGLADIIKIDYQATPVDQQQKLIDALGHRVEFL
AEKIETPAEYEIAKRLGYKMFQGYFFSRPIVVHGAEVHPLRHTLIEMLKELDRPEPSFRRISSQIERSVDLSYKMLRTVN
TVYQKGRHTIQSIEQAVARIGLDELKRWSYLMLLREMQTSESKELIKQSVIRGKMMELIAEDTLTDVLPFDAFITGIFSS
LDVILDEAMQTLIAELPVAPPVKAALLGEQNGLRKLLEDVIAYEQLTIPLHNTDSDWSQYYVEAIRWSRSLDESIE
>Mature_396_residues
MKVYVARQPIFDQQLRVCGYELLYRRSENNIFENVDDSLATADVIHNAYLVFNFRELTEGTRAFINFPQTLIEGEVPSLL
PRQSLVVEVLEHVEPTEKVLQSLRSLRRQGYTIALDDFVFEEKYRPLIGLADIIKIDYQATPVDQQQKLIDALGHRVEFL
AEKIETPAEYEIAKRLGYKMFQGYFFSRPIVVHGAEVHPLRHTLIEMLKELDRPEPSFRRISSQIERSVDLSYKMLRTVN
TVYQKGRHTIQSIEQAVARIGLDELKRWSYLMLLREMQTSESKELIKQSVIRGKMMELIAEDTLTDVLPFDAFITGIFSS
LDVILDEAMQTLIAELPVAPPVKAALLGEQNGLRKLLEDVIAYEQLTIPLHNTDSDWSQYYVEAIRWSRSLDESIE

Specific function: Unknown

COG id: COG3434

COG function: function code T; Predicted signal transduction protein containing EAL and modified HD-GYP domains

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 EAL domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014408
- InterPro:   IPR001633
- InterPro:   IPR013976 [H]

Pfam domain/function: PF00563 EAL; PF08668 HDOD [H]

EC number: NA

Molecular weight: Translated: 45798; Mature: 45798

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVYVARQPIFDQQLRVCGYELLYRRSENNIFENVDDSLATADVIHNAYLVFNFRELTEG
CEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHCHHHHHHHHHHHHHHHEEEHHHHHHH
TRAFINFPQTLIEGEVPSLLPRQSLVVEVLEHVEPTEKVLQSLRSLRRQGYTIALDDFVF
HHHHHHCHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEHHHHH
EEKYRPLIGLADIIKIDYQATPVDQQQKLIDALGHRVEFLAEKIETPAEYEIAKRLGYKM
HHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
FQGYFFSRPIVVHGAEVHPLRHTLIEMLKELDRPEPSFRRISSQIERSVDLSYKMLRTVN
HHHHHHCCCEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
TVYQKGRHTIQSIEQAVARIGLDELKRWSYLMLLREMQTSESKELIKQSVIRGKMMELIA
HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
EDTLTDVLPFDAFITGIFSSLDVILDEAMQTLIAELPVAPPVKAALLGEQNGLRKLLEDV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHHHHHH
IAYEQLTIPLHNTDSDWSQYYVEAIRWSRSLDESIE
HHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKVYVARQPIFDQQLRVCGYELLYRRSENNIFENVDDSLATADVIHNAYLVFNFRELTEG
CEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHCHHHHHHHHHHHHHHHEEEHHHHHHH
TRAFINFPQTLIEGEVPSLLPRQSLVVEVLEHVEPTEKVLQSLRSLRRQGYTIALDDFVF
HHHHHHCHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEHHHHH
EEKYRPLIGLADIIKIDYQATPVDQQQKLIDALGHRVEFLAEKIETPAEYEIAKRLGYKM
HHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
FQGYFFSRPIVVHGAEVHPLRHTLIEMLKELDRPEPSFRRISSQIERSVDLSYKMLRTVN
HHHHHHCCCEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
TVYQKGRHTIQSIEQAVARIGLDELKRWSYLMLLREMQTSESKELIKQSVIRGKMMELIA
HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
EDTLTDVLPFDAFITGIFSSLDVILDEAMQTLIAELPVAPPVKAALLGEQNGLRKLLEDV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHHHHHH
IAYEQLTIPLHNTDSDWSQYYVEAIRWSRSLDESIE
HHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2507523; 9274030; 9384377; 1943994 [H]