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The map label for this gene is yfkH [H]

Identifier: 229916931

GI number: 229916931

Start: 1179442

End: 1180287

Strand: Reverse

Name: yfkH [H]

Synonym: EAT1b_1205

Alternate gene names: 229916931

Gene position: 1180287-1179442 (Counterclockwise)

Preceding gene: 229916933

Following gene: 229916930

Centisome position: 39.34

GC content: 51.18

Gene sequence:

>846_bases
ATGTTTGAAAGTATGTTTCGACTGGCCGTGGACGTCAGGCATCGATTCAAAGACCATCACATTAATGATTATAGTGCCAC
ACTGGCGTTTTTTTGGTTTTTAGCCATCTTTCCGACGTTTGTCGTCCTCTTCGCCGTGATGGCATGGTTTCAAATCGATG
ACGCGCTTCTCATCGAGCAGATTGAAACGCTCATTCCCGGTTCAAGTGTGCGTGAGCTGTTATCCATCGTCTATGATGTG
AGCGGAAACTTGAACGGTGGATTGTTATCGGTCAGTGCCATCATCGCGTTTTGGTCCGCTTCGAACGGGACGGCACGACT
CGTCAAGCTGACGGTGTTCGCATATGGGGAGACGGAAGCGCGTGGCTATATCTTCCGACGGTTGATCGGGTTGCTCGTGA
TTTTAGCAGGGAGTATCGGGGCGGTCATCTTGATCGTGTTTCATCTATTCGGTCAAGAGTTTGTCGAACTGATTTATGCC
CTCTATCCACAAGTTGAGGAATTCGACCGCTTGTCGACGGTGACGCGTTATACGGTCTCGACCATCATTTTGATCATCGC
GTTCTCCCTCTTTTATAAAATCGCGCCACAGCAGCGAGTGCGCTTCATCGAAACACTTCCCGGAGCCGTGTTTGCGGTCA
TCTCGTGGCAATTGCTGTCGACCGGATACAGCATCTATGTCGAACGTTTCTCGATTCTCGGGGATACGTATGGCACGATC
GGTGCGGTCATCCTGCTACAGATTTGGCTCTATCTGACGGCGGCGACGATGCTGATCGGGGCAGAAATCAATGCAGCCTG
GCCCTACCATATGACCCGTCAACCGATCCGGACCCATTTCCCGTAA

Upstream 100 bases:

>100_bases
GTCCTCTATAGGGCATACCCGAAATAACGATTGCTCAAAAGGACAGGTTGCCCGAGATGTAGAATGATATAAGTGCAGAA
GTGATGAGAGGAGGGTGGCG

Downstream 100 bases:

>100_bases
CAAAAAAAGGGATATCATGATTATTCTTTGTGAACATGCTTTAAAACAACCCGTGGCATGGGAATAAACTAGTACAATTT
CACGGAAGAAGGTGTGGCCA

Product: ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 281

Protein sequence:

>281_residues
MFESMFRLAVDVRHRFKDHHINDYSATLAFFWFLAIFPTFVVLFAVMAWFQIDDALLIEQIETLIPGSSVRELLSIVYDV
SGNLNGGLLSVSAIIAFWSASNGTARLVKLTVFAYGETEARGYIFRRLIGLLVILAGSIGAVILIVFHLFGQEFVELIYA
LYPQVEEFDRLSTVTRYTVSTIILIIAFSLFYKIAPQQRVRFIETLPGAVFAVISWQLLSTGYSIYVERFSILGDTYGTI
GAVILLQIWLYLTAATMLIGAEINAAWPYHMTRQPIRTHFP

Sequences:

>Translated_281_residues
MFESMFRLAVDVRHRFKDHHINDYSATLAFFWFLAIFPTFVVLFAVMAWFQIDDALLIEQIETLIPGSSVRELLSIVYDV
SGNLNGGLLSVSAIIAFWSASNGTARLVKLTVFAYGETEARGYIFRRLIGLLVILAGSIGAVILIVFHLFGQEFVELIYA
LYPQVEEFDRLSTVTRYTVSTIILIIAFSLFYKIAPQQRVRFIETLPGAVFAVISWQLLSTGYSIYVERFSILGDTYGTI
GAVILLQIWLYLTAATMLIGAEINAAWPYHMTRQPIRTHFP
>Mature_281_residues
MFESMFRLAVDVRHRFKDHHINDYSATLAFFWFLAIFPTFVVLFAVMAWFQIDDALLIEQIETLIPGSSVRELLSIVYDV
SGNLNGGLLSVSAIIAFWSASNGTARLVKLTVFAYGETEARGYIFRRLIGLLVILAGSIGAVILIVFHLFGQEFVELIYA
LYPQVEEFDRLSTVTRYTVSTIILIIAFSLFYKIAPQQRVRFIETLPGAVFAVISWQLLSTGYSIYVERFSILGDTYGTI
GAVILLQIWLYLTAATMLIGAEINAAWPYHMTRQPIRTHFP

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 31789; Mature: 31789

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFESMFRLAVDVRHRFKDHHINDYSATLAFFWFLAIFPTFVVLFAVMAWFQIDDALLIEQ
CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
IETLIPGSSVRELLSIVYDVSGNLNGGLLSVSAIIAFWSASNGTARLVKLTVFAYGETEA
HHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCHHH
RGYIFRRLIGLLVILAGSIGAVILIVFHLFGQEFVELIYALYPQVEEFDRLSTVTRYTVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
TIILIIAFSLFYKIAPQQRVRFIETLPGAVFAVISWQLLSTGYSIYVERFSILGDTYGTI
HHHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHH
GAVILLQIWLYLTAATMLIGAEINAAWPYHMTRQPIRTHFP
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCHHCCCC
>Mature Secondary Structure
MFESMFRLAVDVRHRFKDHHINDYSATLAFFWFLAIFPTFVVLFAVMAWFQIDDALLIEQ
CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
IETLIPGSSVRELLSIVYDVSGNLNGGLLSVSAIIAFWSASNGTARLVKLTVFAYGETEA
HHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCHHH
RGYIFRRLIGLLVILAGSIGAVILIVFHLFGQEFVELIYALYPQVEEFDRLSTVTRYTVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
TIILIIAFSLFYKIAPQQRVRFIETLPGAVFAVISWQLLSTGYSIYVERFSILGDTYGTI
HHHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHH
GAVILLQIWLYLTAATMLIGAEINAAWPYHMTRQPIRTHFP
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969503; 9384377 [H]