Click here to switch to the map view.

The map label for this gene is yddU [C]

Identifier: 229916897

GI number: 229916897

Start: 1138226

End: 1140073

Strand: Reverse

Name: yddU [C]

Synonym: EAT1b_1170

Alternate gene names: 229916897

Gene position: 1140073-1138226 (Counterclockwise)

Preceding gene: 229916900

Following gene: 229916894

Centisome position: 38.0

GC content: 51.14

Gene sequence:

>1848_bases
ATGGTCGAGAAGAACTTTTCAAACCGAACATATCGTAAACATCAAGAGAAACTGTTCGAGCTCGTACGAATGCCGATTGT
CACCGAGAAAGCGGTGCAGGACGCGATTCGATATATGTGTGAGATCGTCGCCGATATGTTGGCGGTCGATACGGTGTCGA
TTTGGCATTTTGACACATCGTATCAATCCATTTCATGTCAAGTCGCCTATTCTCACGAATCAGGGACACATTACCCGGAG
TTGACGATCCACCGGGCGCTCGCACCGGACTATTTTGATGCGCTTCAGACAGATCGCATCCTAGCGTTTGAGGACGTTCG
CAGTCATCTGTTGGTGAAGGACCTGTATAAAGAGTATTTCGTAGAAGGTAAACGGGTGTACTCCATGTTGGATGCTCCAA
TCTATGCGAACAATCGTGCCAAGGGCGTGATTTGTTGCGAGACGTTTCTGCCTCGGGAGTGGAACTATCTTGAGGAGTTG
ATTGTCAGTACACTTGCGGACTTCATTGCCATCCTGTACTTCCGGCTGGACCGGCAGGCCGTAGATACCCACATTCGTCG
CCTGGCGTATACCGATGAATTGACAGGTCTCTTGAAAGACGTGGGTTTTATCGAGACAGTGGATGCCGAACGTCAGCGTC
AATCGCAGCAACTCGGCGCGATGATGTATTTAAAAGTCGACGATTTCCGGTCGGTCGAAGATGCAATCGGGATTGAGAAG
TCGGATGAAATCGTTCGTGAGGCGGCCAACCGCTTGCGCCGATACGTGGACGAATCGAAACTGAGTCGTTTGTCTCAGTC
TGGGTTTGCAATCTGGTTGCCGTATGGCGATCGGATTAAATTGAACACGATTGCGGATAAACTATGTGAAGCGCTCGTAC
GAGATCCGTTCATTGTAGATGAATTGGAAGTCATTTTGACGGTGAGTGCCTTTATCGCGGTCGAGCAAGAAGACCTCACG
ACCCTTCAAATGATTCATCGGACGCGGATCGCGGCGAGTGAGCGAGGGCTACAGCGGGCAGCCATCGTCTTCTATGAAGA
GGAGATGGGGACGAAGGCGGCGAACCGACTGATCTTGGAGATGAATTTGCGGAGTGGCTTGGCAGGGAATGAATTCTTGC
TGTACTATCAGCCGAAAATCGATGCGCTCACGGGATCGTTAAAAGGGTTCGAAGGATTGATGCGTTGGAATCACCCGGAG
CGCGGTCTCGTGCCACCGCTCGACTTCATCCCGCTCGCCGAATCGACAGGCGTCATCATCGATTTGGAGGAATGGGCGTT
CGTGACGGCTTGTCGCCAGCTTAAACGCTGGCATGAACGGGGAGAGCGCTATGAGCTCGCCCTCAACTTATCGGCACGTC
ACTTCTTATCCGAAGGGGTCGTCGAAAAGTTTGCCCAAATCGCACGGGAAGAAGGGGTCTGTACGAGTTATTTGACCTTG
GAAATCACGGAGAGCGTCGGGATGGAGAACCAGCAACATGTCATCGATCGTTTCGTCGCGTTCCGTGAAGAAGGATTTTC
CATCTCAATCGACGACTTCGGGACAGGGTTCTCGGCGTTCGTCTACTTGAAGCACTATCCGATTCATGAGATCAAAATTG
ATCGCCAATTCATTCAAGTGACCGAGAATGATCCGACGGGCAATGTCATCGTCGAATCGATTGTCGACCTGGCACGTGGG
TTGAATTTAAAGACGGTGTGTGAAGGCGTCGAGACGCTTGAACAGTGGAACGCGTTACGCGAACTCGGCTGTGACGAGAT
GCAGGGGTATTATTTCTCTAGACCGTTACCGCTTGAAGAACTAGAAACATGGATTGCTGACTATACGACACAGACAAGGG
ACGCCTGA

Upstream 100 bases:

>100_bases
ATGGAGGAAGTATTGACTTTCTGTTGAATTTTGGAAAACGTTAAATCGGATGATTCGTGCTATCATTAGGTCAAATTAAA
ATAGGTGAGGTAGCAGACTG

Downstream 100 bases:

>100_bases
GCGTCCCTTTTGTTATGGCATGAATGTGATTCGAATCGAAGTGCCGTGTCCCGGTGCACTGTCGACTTCGACCTTCCCGC
CGTGGGCTTCGATGATGTCC

Product: diguanylate cyclase/phosphodiesterase with GAF sensor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 615; Mature: 615

Protein sequence:

>615_residues
MVEKNFSNRTYRKHQEKLFELVRMPIVTEKAVQDAIRYMCEIVADMLAVDTVSIWHFDTSYQSISCQVAYSHESGTHYPE
LTIHRALAPDYFDALQTDRILAFEDVRSHLLVKDLYKEYFVEGKRVYSMLDAPIYANNRAKGVICCETFLPREWNYLEEL
IVSTLADFIAILYFRLDRQAVDTHIRRLAYTDELTGLLKDVGFIETVDAERQRQSQQLGAMMYLKVDDFRSVEDAIGIEK
SDEIVREAANRLRRYVDESKLSRLSQSGFAIWLPYGDRIKLNTIADKLCEALVRDPFIVDELEVILTVSAFIAVEQEDLT
TLQMIHRTRIAASERGLQRAAIVFYEEEMGTKAANRLILEMNLRSGLAGNEFLLYYQPKIDALTGSLKGFEGLMRWNHPE
RGLVPPLDFIPLAESTGVIIDLEEWAFVTACRQLKRWHERGERYELALNLSARHFLSEGVVEKFAQIAREEGVCTSYLTL
EITESVGMENQQHVIDRFVAFREEGFSISIDDFGTGFSAFVYLKHYPIHEIKIDRQFIQVTENDPTGNVIVESIVDLARG
LNLKTVCEGVETLEQWNALRELGCDEMQGYYFSRPLPLEELETWIADYTTQTRDA

Sequences:

>Translated_615_residues
MVEKNFSNRTYRKHQEKLFELVRMPIVTEKAVQDAIRYMCEIVADMLAVDTVSIWHFDTSYQSISCQVAYSHESGTHYPE
LTIHRALAPDYFDALQTDRILAFEDVRSHLLVKDLYKEYFVEGKRVYSMLDAPIYANNRAKGVICCETFLPREWNYLEEL
IVSTLADFIAILYFRLDRQAVDTHIRRLAYTDELTGLLKDVGFIETVDAERQRQSQQLGAMMYLKVDDFRSVEDAIGIEK
SDEIVREAANRLRRYVDESKLSRLSQSGFAIWLPYGDRIKLNTIADKLCEALVRDPFIVDELEVILTVSAFIAVEQEDLT
TLQMIHRTRIAASERGLQRAAIVFYEEEMGTKAANRLILEMNLRSGLAGNEFLLYYQPKIDALTGSLKGFEGLMRWNHPE
RGLVPPLDFIPLAESTGVIIDLEEWAFVTACRQLKRWHERGERYELALNLSARHFLSEGVVEKFAQIAREEGVCTSYLTL
EITESVGMENQQHVIDRFVAFREEGFSISIDDFGTGFSAFVYLKHYPIHEIKIDRQFIQVTENDPTGNVIVESIVDLARG
LNLKTVCEGVETLEQWNALRELGCDEMQGYYFSRPLPLEELETWIADYTTQTRDA
>Mature_615_residues
MVEKNFSNRTYRKHQEKLFELVRMPIVTEKAVQDAIRYMCEIVADMLAVDTVSIWHFDTSYQSISCQVAYSHESGTHYPE
LTIHRALAPDYFDALQTDRILAFEDVRSHLLVKDLYKEYFVEGKRVYSMLDAPIYANNRAKGVICCETFLPREWNYLEEL
IVSTLADFIAILYFRLDRQAVDTHIRRLAYTDELTGLLKDVGFIETVDAERQRQSQQLGAMMYLKVDDFRSVEDAIGIEK
SDEIVREAANRLRRYVDESKLSRLSQSGFAIWLPYGDRIKLNTIADKLCEALVRDPFIVDELEVILTVSAFIAVEQEDLT
TLQMIHRTRIAASERGLQRAAIVFYEEEMGTKAANRLILEMNLRSGLAGNEFLLYYQPKIDALTGSLKGFEGLMRWNHPE
RGLVPPLDFIPLAESTGVIIDLEEWAFVTACRQLKRWHERGERYELALNLSARHFLSEGVVEKFAQIAREEGVCTSYLTL
EITESVGMENQQHVIDRFVAFREEGFSISIDDFGTGFSAFVYLKHYPIHEIKIDRQFIQVTENDPTGNVIVESIVDLARG
LNLKTVCEGVETLEQWNALRELGCDEMQGYYFSRPLPLEELETWIADYTTQTRDA

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=436, Percent_Identity=33.4862385321101, Blast_Score=227, Evalue=2e-60,
Organism=Escherichia coli, GI1787541, Length=428, Percent_Identity=30.3738317757009, Blast_Score=222, Evalue=5e-59,
Organism=Escherichia coli, GI87081845, Length=235, Percent_Identity=34.8936170212766, Blast_Score=150, Evalue=2e-37,
Organism=Escherichia coli, GI226510982, Length=289, Percent_Identity=30.4498269896194, Blast_Score=146, Evalue=5e-36,
Organism=Escherichia coli, GI1788502, Length=245, Percent_Identity=35.5102040816327, Blast_Score=145, Evalue=8e-36,
Organism=Escherichia coli, GI1790496, Length=252, Percent_Identity=32.9365079365079, Blast_Score=145, Evalue=1e-35,
Organism=Escherichia coli, GI1786507, Length=233, Percent_Identity=35.6223175965665, Blast_Score=145, Evalue=1e-35,
Organism=Escherichia coli, GI1787055, Length=415, Percent_Identity=26.7469879518072, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI87081980, Length=247, Percent_Identity=33.1983805668016, Blast_Score=133, Evalue=4e-32,
Organism=Escherichia coli, GI87081743, Length=244, Percent_Identity=28.6885245901639, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI87082096, Length=263, Percent_Identity=28.8973384030418, Blast_Score=98, Evalue=2e-21,
Organism=Escherichia coli, GI1788849, Length=490, Percent_Identity=24.6938775510204, Blast_Score=97, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 70913; Mature: 70913

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: PS50883 EAL ; PS50887 GGDEF ; PS00867 CPSASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVEKNFSNRTYRKHQEKLFELVRMPIVTEKAVQDAIRYMCEIVADMLAVDTVSIWHFDTS
CCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCC
YQSISCQVAYSHESGTHYPELTIHRALAPDYFDALQTDRILAFEDVRSHLLVKDLYKEYF
CCEEEEEEEEECCCCCCCCCCEEEHHCCCHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHH
VEGKRVYSMLDAPIYANNRAKGVICCETFLPREWNYLEELIVSTLADFIAILYFRLDRQA
HHHHHHHHHHCCCEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VDTHIRRLAYTDELTGLLKDVGFIETVDAERQRQSQQLGAMMYLKVDDFRSVEDAIGIEK
HHHHHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHCEEEEEEECCHHHHHHHHCCCC
SDEIVREAANRLRRYVDESKLSRLSQSGFAIWLPYGDRIKLNTIADKLCEALVRDPFIVD
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEHHHHHHHHHHHHHHCCCHHH
ELEVILTVSAFIAVEQEDLTTLQMIHRTRIAASERGLQRAAIVFYEEEMGTKAANRLILE
HHHHHHHHHHHHEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEHHHCCHHHCEEEEE
MNLRSGLAGNEFLLYYQPKIDALTGSLKGFEGLMRWNHPERGLVPPLDFIPLAESTGVII
EECCCCCCCCEEEEEECCCHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEE
DLEEWAFVTACRQLKRWHERGERYELALNLSARHFLSEGVVEKFAQIAREEGVCTSYLTL
EHHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE
EITESVGMENQQHVIDRFVAFREEGFSISIDDFGTGFSAFVYLKHYPIHEIKIDRQFIQV
EEEHHCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEEECCCCCEEEECCEEEEE
TENDPTGNVIVESIVDLARGLNLKTVCEGVETLEQWNALRELGCDEMQGYYFSRPLPLEE
ECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHCCEECCCCCCHHH
LETWIADYTTQTRDA
HHHHHHHHCCCCCCC
>Mature Secondary Structure
MVEKNFSNRTYRKHQEKLFELVRMPIVTEKAVQDAIRYMCEIVADMLAVDTVSIWHFDTS
CCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCC
YQSISCQVAYSHESGTHYPELTIHRALAPDYFDALQTDRILAFEDVRSHLLVKDLYKEYF
CCEEEEEEEEECCCCCCCCCCEEEHHCCCHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHH
VEGKRVYSMLDAPIYANNRAKGVICCETFLPREWNYLEELIVSTLADFIAILYFRLDRQA
HHHHHHHHHHCCCEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VDTHIRRLAYTDELTGLLKDVGFIETVDAERQRQSQQLGAMMYLKVDDFRSVEDAIGIEK
HHHHHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHCEEEEEEECCHHHHHHHHCCCC
SDEIVREAANRLRRYVDESKLSRLSQSGFAIWLPYGDRIKLNTIADKLCEALVRDPFIVD
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEHHHHHHHHHHHHHHCCCHHH
ELEVILTVSAFIAVEQEDLTTLQMIHRTRIAASERGLQRAAIVFYEEEMGTKAANRLILE
HHHHHHHHHHHHEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEHHHCCHHHCEEEEE
MNLRSGLAGNEFLLYYQPKIDALTGSLKGFEGLMRWNHPERGLVPPLDFIPLAESTGVII
EECCCCCCCCEEEEEECCCHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEE
DLEEWAFVTACRQLKRWHERGERYELALNLSARHFLSEGVVEKFAQIAREEGVCTSYLTL
EHHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE
EITESVGMENQQHVIDRFVAFREEGFSISIDDFGTGFSAFVYLKHYPIHEIKIDRQFIQV
EEEHHCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEEECCCCCEEEECCEEEEE
TENDPTGNVIVESIVDLARGLNLKTVCEGVETLEQWNALRELGCDEMQGYYFSRPLPLEE
ECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHCCEECCCCCCHHH
LETWIADYTTQTRDA
HHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]