Click here to switch to the map view.

The map label for this gene is ybgA [H]

Identifier: 229916866

GI number: 229916866

Start: 1109375

End: 1110091

Strand: Reverse

Name: ybgA [H]

Synonym: EAT1b_1139

Alternate gene names: 229916866

Gene position: 1110091-1109375 (Counterclockwise)

Preceding gene: 229916872

Following gene: 229916865

Centisome position: 37.0

GC content: 55.51

Gene sequence:

>717_bases
ATGTCGCAGTCGACGCTCCAAACCGCAATCAAGGATGAACTGTTGTCCCGCATCAAGAGTGGGCACTATAAAGAAGGGGA
AAAGTTTCCGACCGAATACGCGCTTTGCGAGGAGTTCGATGTGAGCCGGACGACGGTACGGGGCGCACTTAACCAGTTGA
CGACGGAAGGCTATCTGGTCCGTCAACAAGGCCGTGGGACGTTCGTCGCTGGGAAGAAAGTCCAACAGACGTTGTCATAC
ACGCCGAACAACTATGCGGCCCAGCTCGCCGTCCAAGGGAAACGTGGGCAAGTCGCATTGATCGACATCTCGGTCATCTC
GGCGTCCGGTCAAATCGCATCGGTGTTTGAAGCGGAAGACAACGCCCCGATTCAAAAGATTGAGCGAATCCGTCATGCGG
ACGGGGAACCGACACAGTATGAGGTCTCGTTCATCCCGTGGCAAATCGCACCGGGGATCACGAAAGAACAGGCGGAGCAT
TCGCTCTTCCGGACACTAGCGGAGGTCCACGACGTTCATGTCGCGAAGACGACGGAGGCATTGGAGATTGCCTTAGCTGA
TGAGAAGGTAAGTGCGCTCCTCGACTGTCCACTCGGGTCGCCGTGCTTCCATATCGAGACGGTGACAGAGGATGAGTCGG
GACGAGCGATTGAATACTCACGCTCCTACTTCCGCGGAGACAAGACGAGCTTCGTCATTGAACGGGATTATAACTAA

Upstream 100 bases:

>100_bases
TATAAAAAATACAAATAATACAAATAAGTTTTTGTATTTGCATTTGTATGCTTGCTGTATCACAATAAAGGAACCAACCC
AACGTAAAGGAGATGGAGAT

Downstream 100 bases:

>100_bases
CAAAAGCGCTCGACTGTTTCGTATGGAAACGGTCGGGCGCTTTGTTCGTTTCACCTATAACAAAAAGAAATATGGTCATG
TTGAGTGGAAATGACTATGT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 237

Protein sequence:

>238_residues
MSQSTLQTAIKDELLSRIKSGHYKEGEKFPTEYALCEEFDVSRTTVRGALNQLTTEGYLVRQQGRGTFVAGKKVQQTLSY
TPNNYAAQLAVQGKRGQVALIDISVISASGQIASVFEAEDNAPIQKIERIRHADGEPTQYEVSFIPWQIAPGITKEQAEH
SLFRTLAEVHDVHVAKTTEALEIALADEKVSALLDCPLGSPCFHIETVTEDESGRAIEYSRSYFRGDKTSFVIERDYN

Sequences:

>Translated_238_residues
MSQSTLQTAIKDELLSRIKSGHYKEGEKFPTEYALCEEFDVSRTTVRGALNQLTTEGYLVRQQGRGTFVAGKKVQQTLSY
TPNNYAAQLAVQGKRGQVALIDISVISASGQIASVFEAEDNAPIQKIERIRHADGEPTQYEVSFIPWQIAPGITKEQAEH
SLFRTLAEVHDVHVAKTTEALEIALADEKVSALLDCPLGSPCFHIETVTEDESGRAIEYSRSYFRGDKTSFVIERDYN
>Mature_237_residues
SQSTLQTAIKDELLSRIKSGHYKEGEKFPTEYALCEEFDVSRTTVRGALNQLTTEGYLVRQQGRGTFVAGKKVQQTLSYT
PNNYAAQLAVQGKRGQVALIDISVISASGQIASVFEAEDNAPIQKIERIRHADGEPTQYEVSFIPWQIAPGITKEQAEHS
LFRTLAEVHDVHVAKTTEALEIALADEKVSALLDCPLGSPCFHIETVTEDESGRAIEYSRSYFRGDKTSFVIERDYN

Specific function: Unknown

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082252, Length=234, Percent_Identity=28.2051282051282, Blast_Score=107, Evalue=6e-25,
Organism=Escherichia coli, GI1786950, Length=233, Percent_Identity=26.1802575107296, Blast_Score=88, Evalue=4e-19,
Organism=Escherichia coli, GI1790118, Length=213, Percent_Identity=28.6384976525822, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1788418, Length=225, Percent_Identity=25.3333333333333, Blast_Score=72, Evalue=4e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 26462; Mature: 26331

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQSTLQTAIKDELLSRIKSGHYKEGEKFPTEYALCEEFDVSRTTVRGALNQLTTEGYLV
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCEEE
RQQGRGTFVAGKKVQQTLSYTPNNYAAQLAVQGKRGQVALIDISVISASGQIASVFEAED
EECCCCEEEECHHHHHHHCCCCCCEEEEEEEECCCCCEEEEEEEEEECCCCEEEEEECCC
NAPIQKIERIRHADGEPTQYEVSFIPWQIAPGITKEQAEHSLFRTLAEVHDVHVAKTTEA
CCHHHHHHHHHCCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCE
LEIALADEKVSALLDCPLGSPCFHIETVTEDESGRAIEYSRSYFRGDKTSFVIERDYN
EEEEECHHHHHHHHCCCCCCCEEEEEEECCCCCCCEEEEHHHHHCCCCEEEEEEECCC
>Mature Secondary Structure 
SQSTLQTAIKDELLSRIKSGHYKEGEKFPTEYALCEEFDVSRTTVRGALNQLTTEGYLV
CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCEEE
RQQGRGTFVAGKKVQQTLSYTPNNYAAQLAVQGKRGQVALIDISVISASGQIASVFEAED
EECCCCEEEECHHHHHHHCCCCCCEEEEEEEECCCCCEEEEEEEEEECCCCEEEEEECCC
NAPIQKIERIRHADGEPTQYEVSFIPWQIAPGITKEQAEHSLFRTLAEVHDVHVAKTTEA
CCHHHHHHHHHCCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCE
LEIALADEKVSALLDCPLGSPCFHIETVTEDESGRAIEYSRSYFRGDKTSFVIERDYN
EEEEECHHHHHHHHCCCCCCCEEEEEEECCCCCCCEEEEHHHHHCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]