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The map label for this gene is ydcM [C]

Identifier: 229916858

GI number: 229916858

Start: 1103914

End: 1105005

Strand: Reverse

Name: ydcM [C]

Synonym: EAT1b_1131

Alternate gene names: 229916858

Gene position: 1105005-1103914 (Counterclockwise)

Preceding gene: 229916861

Following gene: 229916852

Centisome position: 36.83

GC content: 56.04

Gene sequence:

>1092_bases
ATGCTGAAAGGCTATAAATATAGGCTCCATCCGACGCCGGCACAGGCTGAGTTCCTCATCAAGACGATCGGCTGCGCCCG
GTTCATCTACAACAAGCTGCTCGAGGACCGCATCGCCATCCGTGAGGAGGCGAAAGCGGGAAGCGGAACGAGACGGAAAC
CGGCGACACCCGCCTCCTACAAGCCTCTGTTCCCGTTCCTCGCCGAGGCGGACAGTCTTGCGCTCGCGAACGCGAAACTG
AACCTCGACACCGCGTTCGCGAAGTTCTTCGCCGGGACGGGCGGCTTCCCGGCCTTCAAATCGAGACGACGGTCGCGTGC
CTCCTACACGACGAACAACCAGCACGGCACGATCCGCATCGAGTCGGGAAAAGTCCGGCTGCCGAAGGTCGGGTTCGTGC
GGTTCACACAACATCGCCCGTTCGAGGGCGTCATCCGGTCGGCGACGGTCTCGATGACCAAGACGGGCAAGTTCTTTGTC
TCCATCCTCGTCAAACAGGACGATGCACCATGGATCCCAGCCGAGAACAAGGTCGGGATCGATCTCGGCCTGGAACATTT
CGCCGTCATGACGAACGACGCGATGGTCTCGGAGAAGATCGATAACCCCCGACTCCTCCGGAAGTCCGAAGCGAAGGTCA
AGAAGTCGCAGCGCGCTTTGTCACGTAAGAAAATCGGGAGTAAGAATCGTGAAAAGGCCAAATTACTTTTGGCTAAGAGA
CATGAGAAGATCGCGAACCAACGCAAGGACTTCCTTCATAAGCTGTCGAGACGGATCGTTGACGAGAACCAAGTCATCGT
CGTGGAGACATTGAAGTCGAAGGACATGATGCAAAACCATAAGCTCGCCAAGTCCATCGGGGACGTCAGTTGGTACGAGT
TCGTCCGTCAACTCGAATACAAATCAAACTTCTACGGACGGACGCTCATCAAGGCGGATCAATGGTTCGCATCGACGCAA
ATCTGTTCTTCTTGCGGCGTAAAAGGCGAGAAGAAGGCGATGGATGTCCGTGAATGGACGTGCACTCATTGCGGTGTTCA
TCATGACCGTGACATCAACGCGAGCATCAACCTGTTGATGTTGGCCGACTGA

Upstream 100 bases:

>100_bases
ACGAACAAAAGTTCGTGATTCCGTCAGATTCGTCCTCCCCCTCCACGGGTATCGGACGAGGAGGATACATCACGATCTTC
TGGAGGGAGGAGGGACGGAC

Downstream 100 bases:

>100_bases
CAATCCTTCAGGGCAGGGACTGCCCGACGAGCTTGGTCCATAACCGTGGCTGGTGAGAGCACGGTCTTCCCAAGAAGCTT
CCCCTTCAATTTGCGAAGCA

Product: transposase, IS605 OrfB family

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 363; Mature: 363

Protein sequence:

>363_residues
MLKGYKYRLHPTPAQAEFLIKTIGCARFIYNKLLEDRIAIREEAKAGSGTRRKPATPASYKPLFPFLAEADSLALANAKL
NLDTAFAKFFAGTGGFPAFKSRRRSRASYTTNNQHGTIRIESGKVRLPKVGFVRFTQHRPFEGVIRSATVSMTKTGKFFV
SILVKQDDAPWIPAENKVGIDLGLEHFAVMTNDAMVSEKIDNPRLLRKSEAKVKKSQRALSRKKIGSKNREKAKLLLAKR
HEKIANQRKDFLHKLSRRIVDENQVIVVETLKSKDMMQNHKLAKSIGDVSWYEFVRQLEYKSNFYGRTLIKADQWFASTQ
ICSSCGVKGEKKAMDVREWTCTHCGVHHDRDINASINLLMLAD

Sequences:

>Translated_363_residues
MLKGYKYRLHPTPAQAEFLIKTIGCARFIYNKLLEDRIAIREEAKAGSGTRRKPATPASYKPLFPFLAEADSLALANAKL
NLDTAFAKFFAGTGGFPAFKSRRRSRASYTTNNQHGTIRIESGKVRLPKVGFVRFTQHRPFEGVIRSATVSMTKTGKFFV
SILVKQDDAPWIPAENKVGIDLGLEHFAVMTNDAMVSEKIDNPRLLRKSEAKVKKSQRALSRKKIGSKNREKAKLLLAKR
HEKIANQRKDFLHKLSRRIVDENQVIVVETLKSKDMMQNHKLAKSIGDVSWYEFVRQLEYKSNFYGRTLIKADQWFASTQ
ICSSCGVKGEKKAMDVREWTCTHCGVHHDRDINASINLLMLAD
>Mature_363_residues
MLKGYKYRLHPTPAQAEFLIKTIGCARFIYNKLLEDRIAIREEAKAGSGTRRKPATPASYKPLFPFLAEADSLALANAKL
NLDTAFAKFFAGTGGFPAFKSRRRSRASYTTNNQHGTIRIESGKVRLPKVGFVRFTQHRPFEGVIRSATVSMTKTGKFFV
SILVKQDDAPWIPAENKVGIDLGLEHFAVMTNDAMVSEKIDNPRLLRKSEAKVKKSQRALSRKKIGSKNREKAKLLLAKR
HEKIANQRKDFLHKLSRRIVDENQVIVVETLKSKDMMQNHKLAKSIGDVSWYEFVRQLEYKSNFYGRTLIKADQWFASTQ
ICSSCGVKGEKKAMDVREWTCTHCGVHHDRDINASINLLMLAD

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=359, Percent_Identity=28.4122562674095, Blast_Score=137, Evalue=2e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 41192; Mature: 41192

Theoretical pI: Translated: 10.74; Mature: 10.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKGYKYRLHPTPAQAEFLIKTIGCARFIYNKLLEDRIAIREEAKAGSGTRRKPATPASY
CCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
KPLFPFLAEADSLALANAKLNLDTAFAKFFAGTGGFPAFKSRRRSRASYTTNNQHGTIRI
CCCHHHHHCCCCEEEEECEECHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCEEEEE
ESGKVRLPKVGFVRFTQHRPFEGVIRSATVSMTKTGKFFVSILVKQDDAPWIPAENKVGI
ECCEEECCCCCEEEEECCCCHHHHHHHHEEEEEECCCEEEEEEEECCCCCCCCCCCCCCC
DLGLEHFAVMTNDAMVSEKIDNPRLLRKSEAKVKKSQRALSRKKIGSKNREKAKLLLAKR
EECHHHHEEEECCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
HEKIANQRKDFLHKLSRRIVDENQVIVVETLKSKDMMQNHKLAKSIGDVSWYEFVRQLEY
HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCHHHHHHHHHHHH
KSNFYGRTLIKADQWFASTQICSSCGVKGEKKAMDVREWTCTHCGVHHDRDINASINLLM
HCCCCCCEEEEHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHCCCCCCCCCCCCEEEEE
LAD
EEC
>Mature Secondary Structure
MLKGYKYRLHPTPAQAEFLIKTIGCARFIYNKLLEDRIAIREEAKAGSGTRRKPATPASY
CCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
KPLFPFLAEADSLALANAKLNLDTAFAKFFAGTGGFPAFKSRRRSRASYTTNNQHGTIRI
CCCHHHHHCCCCEEEEECEECHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCEEEEE
ESGKVRLPKVGFVRFTQHRPFEGVIRSATVSMTKTGKFFVSILVKQDDAPWIPAENKVGI
ECCEEECCCCCEEEEECCCCHHHHHHHHEEEEEECCCEEEEEEEECCCCCCCCCCCCCCC
DLGLEHFAVMTNDAMVSEKIDNPRLLRKSEAKVKKSQRALSRKKIGSKNREKAKLLLAKR
EECHHHHEEEECCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
HEKIANQRKDFLHKLSRRIVDENQVIVVETLKSKDMMQNHKLAKSIGDVSWYEFVRQLEY
HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCHHHHHHHHHHHH
KSNFYGRTLIKADQWFASTQICSSCGVKGEKKAMDVREWTCTHCGVHHDRDINASINLLM
HCCCCCCEEEEHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHCCCCCCCCCCCCEEEEE
LAD
EEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]