| Definition | Exiguobacterium sp. AT1b, complete genome. |
|---|---|
| Accession | NC_012673 |
| Length | 2,999,895 |
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The map label for this gene is lytE [H]
Identifier: 229916839
GI number: 229916839
Start: 1090719
End: 1092941
Strand: Direct
Name: lytE [H]
Synonym: EAT1b_1112
Alternate gene names: 229916839
Gene position: 1090719-1092941 (Clockwise)
Preceding gene: 229916809
Following gene: 229916840
Centisome position: 36.36
GC content: 57.98
Gene sequence:
>2223_bases TTGAAACGAATCTTCAGTTTGCTTGTTCTCTTTACTTTTTATTGGACTCTCACCGCACAGGCGGTCGGGTCCGACGCCAT GCTCCCTACCGGCACGACGCTCTATGCCGACCCGGAGGAATCCAGTATCCTGCTCGTCACGAATGAGCCGAAGCGTGTCG ACATCCAGGACGTGACCGAGACCCATACGTCCGTCACGGTCGATACGCAGAACGGATTCGTTCGAAATGACGACGTCCGA TATGCCGTCACACGTTACACCCAGACGGAAACGGATGCGCTCGACGCTTCCGGTAACCCCGTCGCAACCCTCCCAATCGG GACAGCCGTCGACGTCTTTGACCTCGAAGGCGACCTTCTCCTCACGACGGACGGAACGTATGTCGCCCGTGACGCCCTCG GCGAGAAGATGCCGGAAGCCGTGACCCGCTACGCGAAAGCAGGTGCGGTCGTCTTGTCCGCTCCAGACGGGGAAACAATC GCCGAGCTTGAAGCCGGGCAGACGCTCGACGGTTTTGTCGTCGGTTCGATGCTTCGCATCGAGACGGCGGAAGGCTTCGG CTATGTCACCTTAGATGCGACGAGCACTCGTCCGATCAAGACGGGCACCCAGTTCGTCTTGACGACATCGCCTTACACCG ATGCGTCCGGCAAGATCATCGGCTCCCTCGTCCGCGGTGAACAGACGAGCGTCTATGGCACCATCGGAGACAGCGCCCGG CTCTTCAAAGACGGCGCCTACGTCTATATGAAACGCGACGTGCTCGCCGACAAGATGCCACGCTACACGAAGACCGGCAG CCGCTATGCGCTCGCCGCGATCAACGTCTATCAGGAAATGGACAAGAAACAAGTCGTCGGGTCGCTGAAACGGAGTCAGC TCGTCACCATTTACGGGACGGACGGTGACTTCACACGCATCTATACGCGCGGCCAGTTCCTGTTCGTCGAGACAAAATCG CTCGGCAAGACAAAACCGGCACCGCTCAAGACAGGTGAACGATACATCACGAAAGACACGCCGGTCTACGCACGGACGGT CCTGTCGTCGAAGACGTCCCTCAGCCTGAAGCGCGGACAACTCGTCACCATTTACGGGACGAAGGGCAATTATACCCGCA TCTTTACGCAAGGGAACTACTACTTTATCCCGACGAGCGTGACGAGCACGAAAAAACCGCCTCGCTTCGAATCGACGGGC ATGCGGTACTCTCGTTATAACGAGGTCGAAGTGTACGCCTCGACGTCCGTCGTGAAACAAGTCGGTTCTTTGAAACGCGG GCAAATCGTCGAAACGTTCGGGACGAGCGGCTACTACACGCGCATCCGTCTGAACGGGACGTATCGCTATGTCGCGACGG GCTACCTCGCCGTCTCGAAACCGACCGCGAAGCCGAAGGCAGGAACGGTCTTCTATACACAGTTCAACGGGACGCCGTAC TTCTCGGCTGACGTCGCATACGGTCGTCCGGCCGGCACATTGCCACGCGGGACGAAACTTGTCGGGCTCCGCTCGATCGA TGCCGACTTCTGGCACGTCCGTCTTCCGTCCGGGAAACGCGTCTACGTGTTGAACCCATATATCGCCGAGACGAAACCGA AGGCGATCCAACCGGCGAGCGTCTATACGGCCGCCCATTACGGGACGACGAAGAAGACGCCGTTCTACGCCAACCCGAAC GACACTCGTCCGATCGGCTATCTCGATGCCGGTCGTCGCATCTACCCACGTGGGAAGAGTGGCGACTCGTATCTCATCCA GTACGACTGGCGTCCCGTCTACGTCAAGACGAAAGACATTCGCATCAAGCAGGATGCCTTGTTGAAGAAACGGGACAATT CCCAAAAAGAGCGTCTGATCAACGCCGCCGTGAAACATCTCGGAACGCCGTACACATGGGGCTCGCAGTCCCCGCTGAAC GGTGGGTTCGACTGTTCCGGTCTCATCCATTATGCGGCGAACCAGGCCGGGAAGATCGGCGGTCGCACGAACGTGTCGGG CTATTGGTATAGCGGACACTTCAAGAACAAACGGACAGGGATCACGAGTGGTCGTCGCGGGGACATCATCTTCTTCGCCG GCACATACAAATCGGGTCCGTCCCACATCGGCATCATGCTCGATGACGAGTTCTTCATCCATGCCGGGGGCGAGATGCTT CAAATCAACTCGATCCATGACCCGATGTGGCGCCCATATTTCCTAGGGTACAAATCGTTATAA
Upstream 100 bases:
>100_bases ATTCCTTCAATCATTTCCCTTTTATCGAAATAAACAACCTTTTTCACCTCCACTATGTATATACTAAAAAATGTAAATTT CATGAATCGAGGTGGAACGT
Downstream 100 bases:
>100_bases GGGGGATGCTCCATGTTTGACTATATCGATCCGTTCTTATGGCAACTCGTCATCGTTCCGATCCTCACCATCGGCGGCGG TGTCGTAGCCGCCATGATCA
Product: NLP/P60 protein
Products: NA
Alternate protein names: Cell wall-associated polypeptide CWBP33; Gamma-D-glutamate-meso-diaminopimelate muropeptidase lytE; Phosphatase-associated protein papQ [H]
Number of amino acids: Translated: 740; Mature: 740
Protein sequence:
>740_residues MKRIFSLLVLFTFYWTLTAQAVGSDAMLPTGTTLYADPEESSILLVTNEPKRVDIQDVTETHTSVTVDTQNGFVRNDDVR YAVTRYTQTETDALDASGNPVATLPIGTAVDVFDLEGDLLLTTDGTYVARDALGEKMPEAVTRYAKAGAVVLSAPDGETI AELEAGQTLDGFVVGSMLRIETAEGFGYVTLDATSTRPIKTGTQFVLTTSPYTDASGKIIGSLVRGEQTSVYGTIGDSAR LFKDGAYVYMKRDVLADKMPRYTKTGSRYALAAINVYQEMDKKQVVGSLKRSQLVTIYGTDGDFTRIYTRGQFLFVETKS LGKTKPAPLKTGERYITKDTPVYARTVLSSKTSLSLKRGQLVTIYGTKGNYTRIFTQGNYYFIPTSVTSTKKPPRFESTG MRYSRYNEVEVYASTSVVKQVGSLKRGQIVETFGTSGYYTRIRLNGTYRYVATGYLAVSKPTAKPKAGTVFYTQFNGTPY FSADVAYGRPAGTLPRGTKLVGLRSIDADFWHVRLPSGKRVYVLNPYIAETKPKAIQPASVYTAAHYGTTKKTPFYANPN DTRPIGYLDAGRRIYPRGKSGDSYLIQYDWRPVYVKTKDIRIKQDALLKKRDNSQKERLINAAVKHLGTPYTWGSQSPLN GGFDCSGLIHYAANQAGKIGGRTNVSGYWYSGHFKNKRTGITSGRRGDIIFFAGTYKSGPSHIGIMLDDEFFIHAGGEML QINSIHDPMWRPYFLGYKSL
Sequences:
>Translated_740_residues MKRIFSLLVLFTFYWTLTAQAVGSDAMLPTGTTLYADPEESSILLVTNEPKRVDIQDVTETHTSVTVDTQNGFVRNDDVR YAVTRYTQTETDALDASGNPVATLPIGTAVDVFDLEGDLLLTTDGTYVARDALGEKMPEAVTRYAKAGAVVLSAPDGETI AELEAGQTLDGFVVGSMLRIETAEGFGYVTLDATSTRPIKTGTQFVLTTSPYTDASGKIIGSLVRGEQTSVYGTIGDSAR LFKDGAYVYMKRDVLADKMPRYTKTGSRYALAAINVYQEMDKKQVVGSLKRSQLVTIYGTDGDFTRIYTRGQFLFVETKS LGKTKPAPLKTGERYITKDTPVYARTVLSSKTSLSLKRGQLVTIYGTKGNYTRIFTQGNYYFIPTSVTSTKKPPRFESTG MRYSRYNEVEVYASTSVVKQVGSLKRGQIVETFGTSGYYTRIRLNGTYRYVATGYLAVSKPTAKPKAGTVFYTQFNGTPY FSADVAYGRPAGTLPRGTKLVGLRSIDADFWHVRLPSGKRVYVLNPYIAETKPKAIQPASVYTAAHYGTTKKTPFYANPN DTRPIGYLDAGRRIYPRGKSGDSYLIQYDWRPVYVKTKDIRIKQDALLKKRDNSQKERLINAAVKHLGTPYTWGSQSPLN GGFDCSGLIHYAANQAGKIGGRTNVSGYWYSGHFKNKRTGITSGRRGDIIFFAGTYKSGPSHIGIMLDDEFFIHAGGEML QINSIHDPMWRPYFLGYKSL >Mature_740_residues MKRIFSLLVLFTFYWTLTAQAVGSDAMLPTGTTLYADPEESSILLVTNEPKRVDIQDVTETHTSVTVDTQNGFVRNDDVR YAVTRYTQTETDALDASGNPVATLPIGTAVDVFDLEGDLLLTTDGTYVARDALGEKMPEAVTRYAKAGAVVLSAPDGETI AELEAGQTLDGFVVGSMLRIETAEGFGYVTLDATSTRPIKTGTQFVLTTSPYTDASGKIIGSLVRGEQTSVYGTIGDSAR LFKDGAYVYMKRDVLADKMPRYTKTGSRYALAAINVYQEMDKKQVVGSLKRSQLVTIYGTDGDFTRIYTRGQFLFVETKS LGKTKPAPLKTGERYITKDTPVYARTVLSSKTSLSLKRGQLVTIYGTKGNYTRIFTQGNYYFIPTSVTSTKKPPRFESTG MRYSRYNEVEVYASTSVVKQVGSLKRGQIVETFGTSGYYTRIRLNGTYRYVATGYLAVSKPTAKPKAGTVFYTQFNGTPY FSADVAYGRPAGTLPRGTKLVGLRSIDADFWHVRLPSGKRVYVLNPYIAETKPKAIQPASVYTAAHYGTTKKTPFYANPN DTRPIGYLDAGRRIYPRGKSGDSYLIQYDWRPVYVKTKDIRIKQDALLKKRDNSQKERLINAAVKHLGTPYTWGSQSPLN GGFDCSGLIHYAANQAGKIGGRTNVSGYWYSGHFKNKRTGITSGRRGDIIFFAGTYKSGPSHIGIMLDDEFFIHAGGEML QINSIHDPMWRPYFLGYKSL
Specific function: Cleaves gamma-D-glutamate-meso-diaminopimelate bonds. Cell wall hydrolase involved in cell autolysis [H]
COG id: COG0791
COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)
Gene ontology:
Cell location: Secreted, cell wall. Note=LysM repeats are thought to be involved in peptidoglycan binding [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 3 LysM repeats [H]
Homologues:
Organism=Escherichia coli, GI1786421, Length=163, Percent_Identity=31.9018404907975, Blast_Score=73, Evalue=5e-14, Organism=Escherichia coli, GI1787944, Length=124, Percent_Identity=29.8387096774194, Blast_Score=64, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000064 - InterPro: IPR018392 - InterPro: IPR002482 [H]
Pfam domain/function: PF01476 LysM; PF00877 NLPC_P60 [H]
EC number: NA
Molecular weight: Translated: 81832; Mature: 81832
Theoretical pI: Translated: 9.91; Mature: 9.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRIFSLLVLFTFYWTLTAQAVGSDAMLPTGTTLYADPEESSILLVTNEPKRVDIQDVTE CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCEEEEEECCCCEEEHHHHCC THTSVTVDTQNGFVRNDDVRYAVTRYTQTETDALDASGNPVATLPIGTAVDVFDLEGDLL CCCEEEEECCCCEEECCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCEEEEEECCCCEE LTTDGTYVARDALGEKMPEAVTRYAKAGAVVLSAPDGETIAELEAGQTLDGFVVGSMLRI EEECCCEEEHHHHHHHHHHHHHHHHHCCEEEEECCCCCEEEEECCCCCCCCEEEEEEEEE ETAEGFGYVTLDATSTRPIKTGTQFVLTTSPYTDASGKIIGSLVRGEQTSVYGTIGDSAR EECCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCEEEHHHCCCCEEEEEEECCCCE LFKDGAYVYMKRDVLADKMPRYTKTGSRYALAAINVYQEMDKKQVVGSLKRSQLVTIYGT EEECCEEEEEECHHHHHCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHCCCEEEEEEEC DGDFTRIYTRGQFLFVETKSLGKTKPAPLKTGERYITKDTPVYARTVLSSKTSLSLKRGQ CCCEEEEEECCEEEEEEECCCCCCCCCCCCCCCEEEECCCCHHHHHHHCCCCEEEEECCC LVTIYGTKGNYTRIFTQGNYYFIPTSVTSTKKPPRFESTGMRYSRYNEVEVYASTSVVKQ EEEEEECCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCCEEECCCEEEEEECHHHHHH VGSLKRGQIVETFGTSGYYTRIRLNGTYRYVATGYLAVSKPTAKPKAGTVFYTQFNGTPY HHCCCCCCEEEECCCCCEEEEEEECCEEEEEEEEEEEEECCCCCCCCCEEEEEEECCCEE FSADVAYGRPAGTLPRGTKLVGLRSIDADFWHVRLPSGKRVYVLNPYIAETKPKAIQPAS EEECCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCC VYTAAHYGTTKKTPFYANPNDTRPIGYLDAGRRIYPRGKSGDSYLIQYDWRPVYVKTKDI EEEEEECCCCCCCCEECCCCCCCEEEEECCCCEECCCCCCCCEEEEEECCEEEEEEECCE RIKQDALLKKRDNSQKERLINAAVKHLGTPYTWGSQSPLNGGFDCSGLIHYAANQAGKIG EECHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHEECCCCCCCCC GRTNVSGYWYSGHFKNKRTGITSGRRGDIIFFAGTYKSGPSHIGIMLDDEFFIHAGGEML CCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCEEEECCCCEE QINSIHDPMWRPYFLGYKSL EEECCCCCCCCCEECCCCCC >Mature Secondary Structure MKRIFSLLVLFTFYWTLTAQAVGSDAMLPTGTTLYADPEESSILLVTNEPKRVDIQDVTE CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCEEEEEECCCCEEEHHHHCC THTSVTVDTQNGFVRNDDVRYAVTRYTQTETDALDASGNPVATLPIGTAVDVFDLEGDLL CCCEEEEECCCCEEECCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCEEEEEECCCCEE LTTDGTYVARDALGEKMPEAVTRYAKAGAVVLSAPDGETIAELEAGQTLDGFVVGSMLRI EEECCCEEEHHHHHHHHHHHHHHHHHCCEEEEECCCCCEEEEECCCCCCCCEEEEEEEEE ETAEGFGYVTLDATSTRPIKTGTQFVLTTSPYTDASGKIIGSLVRGEQTSVYGTIGDSAR EECCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCEEEHHHCCCCEEEEEEECCCCE LFKDGAYVYMKRDVLADKMPRYTKTGSRYALAAINVYQEMDKKQVVGSLKRSQLVTIYGT EEECCEEEEEECHHHHHCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHCCCEEEEEEEC DGDFTRIYTRGQFLFVETKSLGKTKPAPLKTGERYITKDTPVYARTVLSSKTSLSLKRGQ CCCEEEEEECCEEEEEEECCCCCCCCCCCCCCCEEEECCCCHHHHHHHCCCCEEEEECCC LVTIYGTKGNYTRIFTQGNYYFIPTSVTSTKKPPRFESTGMRYSRYNEVEVYASTSVVKQ EEEEEECCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCCEEECCCEEEEEECHHHHHH VGSLKRGQIVETFGTSGYYTRIRLNGTYRYVATGYLAVSKPTAKPKAGTVFYTQFNGTPY HHCCCCCCEEEECCCCCEEEEEEECCEEEEEEEEEEEEECCCCCCCCCEEEEEEECCCEE FSADVAYGRPAGTLPRGTKLVGLRSIDADFWHVRLPSGKRVYVLNPYIAETKPKAIQPAS EEECCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCC VYTAAHYGTTKKTPFYANPNDTRPIGYLDAGRRIYPRGKSGDSYLIQYDWRPVYVKTKDI EEEEEECCCCCCCCEECCCCCCCEEEEECCCCEECCCCCCCCEEEEEECCEEEEEEECCE RIKQDALLKKRDNSQKERLINAAVKHLGTPYTWGSQSPLNGGFDCSGLIHYAANQAGKIG EECHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHEECCCCCCCCC GRTNVSGYWYSGHFKNKRTGITSGRRGDIIFFAGTYKSGPSHIGIMLDDEFFIHAGGEML CCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCEEEECCCCEE QINSIHDPMWRPYFLGYKSL EEECCCCCCCCCEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9457885; 9579061; 9384377; 8045898 [H]