Click here to switch to the map view.

The map label for this gene is 229916702

Identifier: 229916702

GI number: 229916702

Start: 918962

End: 919504

Strand: Reverse

Name: 229916702

Synonym: EAT1b_0975

Alternate gene names: NA

Gene position: 919504-918962 (Counterclockwise)

Preceding gene: 229916703

Following gene: 229916701

Centisome position: 30.65

GC content: 48.25

Gene sequence:

>543_bases
ATGGATGACCAGGTCATCATCGATTGGTACTGGGAACGATCGGAGTATGCGATTATCGCGACGAAGAAGAAATACGGAAG
CTATTGTCACCGTGTTTCTTACAATATTCTACAAAATCGCGAAGACACAGAAGAGTGTTTGAACGACTTATATATGAAAG
CGTGGGAGTCGATCCCGCCGACACGCCCCCTTCGACTCGGAGCGTATTTGACGAAGATCGTGCGAAATCTCGCACTACAG
CGTTATAAGAAGAATCATGCGAAAAAACGTGGCGGTGGGGAAGTCCCGCTCGTCTATGAAGAGCTAGAACACGTCCTCAC
GGAATCAATGAAAGACGAGGACCTCATTGACCTGTTGAATGCATTTCTAGCAGACCTGCCACGACTGACAAGGGTGATGT
TCATGCAACGTTATTTCTATTTACACTCGATTCAAGAAATCGCAACGACACACGAGCTCGGGGAGAGCCATGTCAAAATG
ACCTTGAAGCGCACGCGGGATGCGTTACAGCGAGCGCTTGAAGCAGAAGGAGTTCGTGTATGA

Upstream 100 bases:

>100_bases
TTCCTCGTCTCGATGACGAGGTTTTTTTGATAGATTGTGACGAATGATATGAGGTTGGGATCTATAGTTATAGAGGGGTT
ATTACGAAGGGGGTAACTGG

Downstream 100 bases:

>100_bases
AAAATGACCAGATCCTTCGACTACTCGGTGAAGTCGATGACCGGTATATAGAGGAATCGATGATGATAGAGCGAAAACCT
TATCAACGACTAAAATGGGG

Product: RNA polymerase, sigma-24 subunit, ECF subfamily

Products: NA

Alternate protein names: RNA Polymerase Sigma-70 Factor ECF Subfamily; DNA-Directed RNA Polymeracialized Sigma Subunit; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-24 Subunit ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Subunit

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MDDQVIIDWYWERSEYAIIATKKKYGSYCHRVSYNILQNREDTEECLNDLYMKAWESIPPTRPLRLGAYLTKIVRNLALQ
RYKKNHAKKRGGGEVPLVYEELEHVLTESMKDEDLIDLLNAFLADLPRLTRVMFMQRYFYLHSIQEIATTHELGESHVKM
TLKRTRDALQRALEAEGVRV

Sequences:

>Translated_180_residues
MDDQVIIDWYWERSEYAIIATKKKYGSYCHRVSYNILQNREDTEECLNDLYMKAWESIPPTRPLRLGAYLTKIVRNLALQ
RYKKNHAKKRGGGEVPLVYEELEHVLTESMKDEDLIDLLNAFLADLPRLTRVMFMQRYFYLHSIQEIATTHELGESHVKM
TLKRTRDALQRALEAEGVRV
>Mature_180_residues
MDDQVIIDWYWERSEYAIIATKKKYGSYCHRVSYNILQNREDTEECLNDLYMKAWESIPPTRPLRLGAYLTKIVRNLALQ
RYKKNHAKKRGGGEVPLVYEELEHVLTESMKDEDLIDLLNAFLADLPRLTRVMFMQRYFYLHSIQEIATTHELGESHVKM
TLKRTRDALQRALEAEGVRV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21281; Mature: 21281

Theoretical pI: Translated: 7.65; Mature: 7.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDQVIIDWYWERSEYAIIATKKKYGSYCHRVSYNILQNREDTEECLNDLYMKAWESIPP
CCCCEEEEEEECCCCEEEEEECHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
TRPLRLGAYLTKIVRNLALQRYKKNHAKKRGGGEVPLVYEELEHVLTESMKDEDLIDLLN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHH
AFLADLPRLTRVMFMQRYFYLHSIQEIATTHELGESHVKMTLKRTRDALQRALEAEGVRV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MDDQVIIDWYWERSEYAIIATKKKYGSYCHRVSYNILQNREDTEECLNDLYMKAWESIPP
CCCCEEEEEEECCCCEEEEEECHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
TRPLRLGAYLTKIVRNLALQRYKKNHAKKRGGGEVPLVYEELEHVLTESMKDEDLIDLLN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHH
AFLADLPRLTRVMFMQRYFYLHSIQEIATTHELGESHVKMTLKRTRDALQRALEAEGVRV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA