BacMap

Definition	Exiguobacterium sp. AT1b, complete genome.
Accession	NC_012673
Length	2,999,895

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The map label for this gene is yhdF [H]

Identifier: 229916547

GI number: 229916547

Start: 773237

End: 774139

Strand: Direct

Name: yhdF [H]

Synonym: EAT1b_0818

Alternate gene names: 229916547

Gene position: 773237-774139 (Clockwise)

Preceding gene: 229916540

Following gene: 229916548

Centisome position: 25.78

GC content: 51.05

Gene sequence:

>903_bases
ATGCGCGATAATCGTCTGAACACCGTAGGCAGTCGAAAAGATTTTGAGGCATTCAAAAAGAAGGCACAAGAACAGGCACA
CCAACCGGGAATCGATTCGAAGATGGAGCCCTTCCCCATTTATGAACGGGAAGATTACAAAGGTAGTGACAAGTTAAAAG
ATAAGGTCGCCATCATCACCGGTGGGGATTCCGGAATCGGAAAGTCGGTCGCCATCTTTTTCGCCCACGAAGGTGCGAAC
TCCGTCATCGTCTATAAGGACCAAAACGAACTCGAGGACGCGGAAGCGACGAAAGAACGGATTGAGGACTTAGGTCAAGC
CTGTCTATTACTTCAAGGCGACCTCGGAGAATCTTCTTTCTGTCAACGAGTCGTCGAAGAGACGCTCGAGACGTTCGGCC
GGATCGACATCCTCGTCAACAACGCCGCCGAGCAGCATCCACAGGAATCGCTCCTCGATATATCAGATGAACAACTCGAG
AAGACGTTCCGCACGAATATCTTCAGCATGTTCTACTTAACGAAAGCAGCGCTCCCCTACTTAAAAGAAGGAGCGAGCAT
CATCAATACGACCTCAATCACGGCCTATGAAGGAAACGACCAATTGATTGACTATGCGTCGACGAAAGGTGCCATCACGG
CATTCACCCGCTCGCTCGCCAAAAACTTGGCGGACAAGAAGATTCGCGTCAACGGGGTCGCCCCGGGACCGATTTGGACG
CCGCTTATCCCGTCAACGTTTGACGCGGAGAAAGTGAAATCGTTCGGTGACTCTTCCGAGATGAAACGACCGGGGCAACC
GGCCGAACTTGCACCGGCCTATGTCTATCTCGCAAGCGATGATTCGACGTATGTCAGTGGTCAAGTCATTCACGTAAATG
GTGGAACCGTGATTAATGGATAA

Upstream 100 bases:

>100_bases
GTTCATTTTTCAATTTCATTCCATTTTTTGAATGAGCGATTAGTTTTCAATGGGTGTGGTATAGACAAAAAGAGTCAAAT
TCAGAAAGGGGAATGTATAC

Downstream 100 bases:

>100_bases
TTGGTGAGACTCAGCGATTGCTGGGTCTTTTTTTGTTAGTTCCTTTTGTTTCCCTTCTCCATCTTTTCTATGTTTCAATA
AGGAAGAGATTACCACTTTC

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MRDNRLNTVGSRKDFEAFKKKAQEQAHQPGIDSKMEPFPIYEREDYKGSDKLKDKVAIITGGDSGIGKSVAIFFAHEGAN
SVIVYKDQNELEDAEATKERIEDLGQACLLLQGDLGESSFCQRVVEETLETFGRIDILVNNAAEQHPQESLLDISDEQLE
KTFRTNIFSMFYLTKAALPYLKEGASIINTTSITAYEGNDQLIDYASTKGAITAFTRSLAKNLADKKIRVNGVAPGPIWT
PLIPSTFDAEKVKSFGDSSEMKRPGQPAELAPAYVYLASDDSTYVSGQVIHVNGGTVING

Sequences:

>Translated_300_residues
MRDNRLNTVGSRKDFEAFKKKAQEQAHQPGIDSKMEPFPIYEREDYKGSDKLKDKVAIITGGDSGIGKSVAIFFAHEGAN
SVIVYKDQNELEDAEATKERIEDLGQACLLLQGDLGESSFCQRVVEETLETFGRIDILVNNAAEQHPQESLLDISDEQLE
KTFRTNIFSMFYLTKAALPYLKEGASIINTTSITAYEGNDQLIDYASTKGAITAFTRSLAKNLADKKIRVNGVAPGPIWT
PLIPSTFDAEKVKSFGDSSEMKRPGQPAELAPAYVYLASDDSTYVSGQVIHVNGGTVING
>Mature_300_residues
MRDNRLNTVGSRKDFEAFKKKAQEQAHQPGIDSKMEPFPIYEREDYKGSDKLKDKVAIITGGDSGIGKSVAIFFAHEGAN
SVIVYKDQNELEDAEATKERIEDLGQACLLLQGDLGESSFCQRVVEETLETFGRIDILVNNAAEQHPQESLLDISDEQLE
KTFRTNIFSMFYLTKAALPYLKEGASIINTTSITAYEGNDQLIDYASTKGAITAFTRSLAKNLADKKIRVNGVAPGPIWT
PLIPSTFDAEKVKSFGDSSEMKRPGQPAELAPAYVYLASDDSTYVSGQVIHVNGGTVING

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=252, Percent_Identity=32.5396825396825, Blast_Score=129, Evalue=2e-30,
Organism=Homo sapiens, GI59889578, Length=230, Percent_Identity=32.6086956521739, Blast_Score=116, Evalue=3e-26,
Organism=Homo sapiens, GI40254992, Length=244, Percent_Identity=33.1967213114754, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI10190704, Length=267, Percent_Identity=31.0861423220974, Blast_Score=107, Evalue=1e-23,
Organism=Homo sapiens, GI5031737, Length=253, Percent_Identity=33.9920948616601, Blast_Score=106, Evalue=2e-23,
Organism=Homo sapiens, GI15277342, Length=259, Percent_Identity=28.957528957529, Blast_Score=103, Evalue=3e-22,
Organism=Homo sapiens, GI19923817, Length=261, Percent_Identity=29.5019157088123, Blast_Score=101, Evalue=7e-22,
Organism=Homo sapiens, GI126723750, Length=255, Percent_Identity=28.6274509803922, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI33667109, Length=203, Percent_Identity=34.9753694581281, Blast_Score=90, Evalue=3e-18,
Organism=Homo sapiens, GI66933014, Length=256, Percent_Identity=27.734375, Blast_Score=88, Evalue=8e-18,
Organism=Homo sapiens, GI4758504, Length=259, Percent_Identity=30.1158301158301, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI126723191, Length=186, Percent_Identity=31.7204301075269, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI31542939, Length=216, Percent_Identity=30.5555555555556, Blast_Score=85, Evalue=8e-17,
Organism=Homo sapiens, GI7705925, Length=248, Percent_Identity=27.4193548387097, Blast_Score=83, Evalue=4e-16,
Organism=Homo sapiens, GI210032110, Length=171, Percent_Identity=32.1637426900585, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI7706318, Length=218, Percent_Identity=29.3577981651376, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI20149619, Length=205, Percent_Identity=30.2439024390244, Blast_Score=76, Evalue=5e-14,
Organism=Homo sapiens, GI310128830, Length=197, Percent_Identity=31.4720812182741, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI310115468, Length=197, Percent_Identity=31.4720812182741, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI4503301, Length=260, Percent_Identity=30, Blast_Score=72, Evalue=9e-13,
Organism=Homo sapiens, GI83715985, Length=259, Percent_Identity=28.1853281853282, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI4504505, Length=198, Percent_Identity=28.2828282828283, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI31543615, Length=191, Percent_Identity=30.3664921465969, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI224922801, Length=172, Percent_Identity=30.2325581395349, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI210032112, Length=93, Percent_Identity=39.7849462365591, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI109715829, Length=242, Percent_Identity=25.2066115702479, Blast_Score=65, Evalue=5e-11,
Organism=Escherichia coli, GI1789378, Length=268, Percent_Identity=48.5074626865672, Blast_Score=252, Evalue=2e-68,
Organism=Escherichia coli, GI1787905, Length=249, Percent_Identity=33.7349397590361, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI1787335, Length=243, Percent_Identity=31.6872427983539, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI2367175, Length=253, Percent_Identity=30.4347826086957, Blast_Score=118, Evalue=5e-28,
Organism=Escherichia coli, GI1789208, Length=250, Percent_Identity=32, Blast_Score=114, Evalue=5e-27,
Organism=Escherichia coli, GI87082160, Length=252, Percent_Identity=32.9365079365079, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1788459, Length=248, Percent_Identity=32.6612903225806, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI87082100, Length=262, Percent_Identity=32.824427480916, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI1790717, Length=252, Percent_Identity=28.1746031746032, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI2367365, Length=245, Percent_Identity=25.7142857142857, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787526, Length=259, Percent_Identity=25.8687258687259, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1786812, Length=252, Percent_Identity=26.5873015873016, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788891, Length=246, Percent_Identity=27.6422764227642, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787820, Length=248, Percent_Identity=25.8064516129032, Blast_Score=61, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17561402, Length=256, Percent_Identity=33.984375, Blast_Score=129, Evalue=1e-30,
Organism=Caenorhabditis elegans, GI17560676, Length=248, Percent_Identity=32.6612903225806, Blast_Score=129, Evalue=2e-30,
Organism=Caenorhabditis elegans, GI25147288, Length=255, Percent_Identity=33.3333333333333, Blast_Score=118, Evalue=4e-27,
Organism=Caenorhabditis elegans, GI17551412, Length=264, Percent_Identity=33.7121212121212, Blast_Score=114, Evalue=4e-26,
Organism=Caenorhabditis elegans, GI17560332, Length=264, Percent_Identity=33.7121212121212, Blast_Score=114, Evalue=9e-26,
Organism=Caenorhabditis elegans, GI17555706, Length=277, Percent_Identity=31.0469314079422, Blast_Score=113, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI193204405, Length=265, Percent_Identity=32.8301886792453, Blast_Score=112, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI17560150, Length=264, Percent_Identity=33.3333333333333, Blast_Score=108, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI17531453, Length=263, Percent_Identity=33.4600760456274, Blast_Score=108, Evalue=4e-24,
Organism=Caenorhabditis elegans, GI17538480, Length=266, Percent_Identity=31.9548872180451, Blast_Score=107, Evalue=7e-24,
Organism=Caenorhabditis elegans, GI71994600, Length=247, Percent_Identity=30.7692307692308, Blast_Score=106, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI17562910, Length=270, Percent_Identity=31.8518518518519, Blast_Score=105, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17562990, Length=261, Percent_Identity=33.7164750957854, Blast_Score=105, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI72000259, Length=265, Percent_Identity=30.9433962264151, Blast_Score=104, Evalue=6e-23,
Organism=Caenorhabditis elegans, GI17562904, Length=264, Percent_Identity=31.8181818181818, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17562906, Length=266, Percent_Identity=30.4511278195489, Blast_Score=101, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI17559104, Length=263, Percent_Identity=31.1787072243346, Blast_Score=101, Evalue=5e-22,
Organism=Caenorhabditis elegans, GI71994604, Length=253, Percent_Identity=29.6442687747036, Blast_Score=101, Evalue=6e-22,
Organism=Caenorhabditis elegans, GI17560220, Length=263, Percent_Identity=31.1787072243346, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI17563726, Length=261, Percent_Identity=29.1187739463602, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI17536025, Length=273, Percent_Identity=30.03663003663, Blast_Score=98, Evalue=6e-21,
Organism=Caenorhabditis elegans, GI17562908, Length=265, Percent_Identity=29.811320754717, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17538486, Length=264, Percent_Identity=30.3030303030303, Blast_Score=94, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17544670, Length=266, Percent_Identity=27.8195488721804, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17536651, Length=273, Percent_Identity=29.3040293040293, Blast_Score=91, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI17565030, Length=265, Percent_Identity=27.1698113207547, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17564282, Length=188, Percent_Identity=35.1063829787234, Blast_Score=84, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17538182, Length=257, Percent_Identity=28.4046692607004, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17561272, Length=256, Percent_Identity=29.296875, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17568967, Length=192, Percent_Identity=27.0833333333333, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI115534694, Length=248, Percent_Identity=27.8225806451613, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI193203115, Length=205, Percent_Identity=31.219512195122, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI193203117, Length=191, Percent_Identity=31.9371727748691, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17567345, Length=197, Percent_Identity=29.4416243654822, Blast_Score=72, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI71982365, Length=244, Percent_Identity=27.0491803278689, Blast_Score=69, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6323882, Length=198, Percent_Identity=30.8080808080808, Blast_Score=85, Evalue=1e-17,
Organism=Saccharomyces cerevisiae, GI6322861, Length=256, Percent_Identity=24.609375, Blast_Score=77, Evalue=3e-15,
Organism=Saccharomyces cerevisiae, GI6324126, Length=249, Percent_Identity=26.9076305220884, Blast_Score=71, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6322226, Length=212, Percent_Identity=27.8301886792453, Blast_Score=70, Evalue=4e-13,
Organism=Drosophila melanogaster, GI28571526, Length=251, Percent_Identity=35.8565737051793, Blast_Score=127, Evalue=7e-30,
Organism=Drosophila melanogaster, GI21357041, Length=251, Percent_Identity=35.0597609561753, Blast_Score=125, Evalue=3e-29,
Organism=Drosophila melanogaster, GI24644339, Length=249, Percent_Identity=34.5381526104418, Blast_Score=123, Evalue=1e-28,
Organism=Drosophila melanogaster, GI21355319, Length=250, Percent_Identity=32.4, Blast_Score=120, Evalue=1e-27,
Organism=Drosophila melanogaster, GI23397609, Length=251, Percent_Identity=31.0756972111554, Blast_Score=115, Evalue=3e-26,
Organism=Drosophila melanogaster, GI24639444, Length=249, Percent_Identity=31.7269076305221, Blast_Score=108, Evalue=3e-24,
Organism=Drosophila melanogaster, GI24643142, Length=248, Percent_Identity=31.4516129032258, Blast_Score=93, Evalue=3e-19,
Organism=Drosophila melanogaster, GI24644337, Length=248, Percent_Identity=32.6612903225806, Blast_Score=84, Evalue=8e-17,
Organism=Drosophila melanogaster, GI17737361, Length=258, Percent_Identity=24.4186046511628, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI21358495, Length=207, Percent_Identity=30.9178743961353, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI116007236, Length=207, Percent_Identity=26.0869565217391, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24665247, Length=198, Percent_Identity=28.7878787878788, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI221331216, Length=198, Percent_Identity=28.7878787878788, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI18859837, Length=199, Percent_Identity=26.6331658291457, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI281364892, Length=178, Percent_Identity=28.6516853932584, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24665243, Length=198, Percent_Identity=28.7878787878788, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24584748, Length=188, Percent_Identity=28.7234042553192, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI221331218, Length=198, Percent_Identity=28.7878787878788, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI161076933, Length=244, Percent_Identity=27.4590163934426, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24641232, Length=210, Percent_Identity=24.2857142857143, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24580925, Length=220, Percent_Identity=26.8181818181818, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 32929; Mature: 32929

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDNRLNTVGSRKDFEAFKKKAQEQAHQPGIDSKMEPFPIYEREDYKGSDKLKDKVAIIT
CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
GGDSGIGKSVAIFFAHEGANSVIVYKDQNELEDAEATKERIEDLGQACLLLQGDLGESSF
CCCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHEEEEEECCCCCHHH
CQRVVEETLETFGRIDILVNNAAEQHPQESLLDISDEQLEKTFRTNIFSMFYLTKAALPY
HHHHHHHHHHHHCCEEEEECCCHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LKEGASIINTTSITAYEGNDQLIDYASTKGAITAFTRSLAKNLADKKIRVNGVAPGPIWT
HHCCCCEEEEEEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCC
PLIPSTFDAEKVKSFGDSSEMKRPGQPAELAPAYVYLASDDSTYVSGQVIHVNGGTVING
CCCCCCCCHHHHHHCCCCHHCCCCCCCCCCCCEEEEEECCCCEEECCEEEEECCCEEECC
>Mature Secondary Structure
MRDNRLNTVGSRKDFEAFKKKAQEQAHQPGIDSKMEPFPIYEREDYKGSDKLKDKVAIIT
CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
GGDSGIGKSVAIFFAHEGANSVIVYKDQNELEDAEATKERIEDLGQACLLLQGDLGESSF
CCCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHEEEEEECCCCCHHH
CQRVVEETLETFGRIDILVNNAAEQHPQESLLDISDEQLEKTFRTNIFSMFYLTKAALPY
HHHHHHHHHHHHCCEEEEECCCHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LKEGASIINTTSITAYEGNDQLIDYASTKGAITAFTRSLAKNLADKKIRVNGVAPGPIWT
HHCCCCEEEEEEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCC
PLIPSTFDAEKVKSFGDSSEMKRPGQPAELAPAYVYLASDDSTYVSGQVIHVNGGTVING
CCCCCCCCHHHHHHCCCCHHCCCCCCCCCCCCEEEEEECCCCEEECCEEEEECCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]