| Definition | Exiguobacterium sp. AT1b, complete genome. |
|---|---|
| Accession | NC_012673 |
| Length | 2,999,895 |
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The map label for this gene is yqjV [H]
Identifier: 229916535
GI number: 229916535
Start: 759941
End: 761155
Strand: Reverse
Name: yqjV [H]
Synonym: EAT1b_0806
Alternate gene names: 229916535
Gene position: 761155-759941 (Counterclockwise)
Preceding gene: 229916536
Following gene: 229916534
Centisome position: 25.37
GC content: 51.44
Gene sequence:
>1215_bases ATGAAGCTCAGACAGATTCATCCACTGACGTGGGGCGTCCTGTTCGGGACGTTTTTTGCACGACTGGCGACGTTTTTTGT CATGCCATTTTTTGCGATCTATCTGGCTACGCTCGGCTTTTCGGCGAGTGTGATCGGAACGATCTTTGCCGTGACGGCAC TTTCAGGTCTGTTCATGAGCTTCTTTGGGGGGACACTCTCTGATCGGTATGGACGAAAACAACTCATGTTGATTGGGATC GTGCTGAATGCCGTCACGTTCGCTGGTCTCGCACTTGCGACGGAACTGTTTTGGTTTTACATGTTGTCGATGTTGATGGG GATGTCACGATCATTCCTAGAACCGGCTTCGCGTGCGCTCATCAGTGACACGACACAGGCGGACCAACGGGTCATCGTCT ATAACGTCCGTTACTTCATGATCAATATCGCCGCGGCCATCGGGCCACTCTTGGCTGTCGTCTTGTCACTCACTGGTGTG AAGACTGCATTCTTCGTTGTGACGGCTGTCTACGTATTATACGGAATCATTATCTCGACCTTGTTTTACAAATATCCGTT TGAAGAAGGGGATGGGGTCAAGGCACGCCCACGCTTGACGGAGACGTTTCGTGTCCTACGAGACGACCGGACATTCCGTG CAGTCATCATCGGGATGATTTTCGCGATTATCGGTTACAGTCAGTTCAATTCGACGCTTCCGCAATTCATCGCGCTACGC GACGGATTAGAAGACGGTTCGAGATTGTTCGCTTACTTATTGACGACAAACGCCATCACGGTTCTCATCGTCCAATATCC GATCATGCGTTTCGGGATTCGTGTCTCTCCGATCAAGTCACTCTTCTTCGGGATTTCGACGTTGTCATTCGGACTTTTGC TCATCGGATTTGCGACGGTAGAGTGGGTCCTATTTGTCGCGATGGCCATCTTTACCGTCGGTGAGGTGTTGATGTTCACG ATGACGGACGTCTTGACGGATGAACTCGCGCCGGAACATTTACGGGGCACTTATTTCGGGGCGATGGGATTGACGTCACT CGGACAGACAATCGGACCGATTATCGGGGGTGTATTACTCGATACATTCGGTCAGTCGTCTCTTCCTGTATTCGGAAGTT TGGCACTCTTGACGGGGTGTGGTGCCTTCTTCTTCGCGGCTGCCGTACGGGAACGGAAAGCAGTCCTCGCACTCGTCGAA GAAAATGCCGGATAA
Upstream 100 bases:
>100_bases TCATCTCGACTCAGGAGTCTTCCTCCTGGGTCTTTTTTTGTCTAGTGTTCTTTCATAAAGAGAAGTACACTACATATATG AAAGAAAAGGGGGGATTTTG
Downstream 100 bases:
>100_bases TGTCTTGATTTCCTACTATTAGCATTCTCAACTTTTATCATTCTATTGAGAATGAATTCTAAGGTGAGTCGCTTGAAATA AAAAAATGACTAGTCTAAGA
Product: major facilitator superfamily MFS_1
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 404; Mature: 404
Protein sequence:
>404_residues MKLRQIHPLTWGVLFGTFFARLATFFVMPFFAIYLATLGFSASVIGTIFAVTALSGLFMSFFGGTLSDRYGRKQLMLIGI VLNAVTFAGLALATELFWFYMLSMLMGMSRSFLEPASRALISDTTQADQRVIVYNVRYFMINIAAAIGPLLAVVLSLTGV KTAFFVVTAVYVLYGIIISTLFYKYPFEEGDGVKARPRLTETFRVLRDDRTFRAVIIGMIFAIIGYSQFNSTLPQFIALR DGLEDGSRLFAYLLTTNAITVLIVQYPIMRFGIRVSPIKSLFFGISTLSFGLLLIGFATVEWVLFVAMAIFTVGEVLMFT MTDVLTDELAPEHLRGTYFGAMGLTSLGQTIGPIIGGVLLDTFGQSSLPVFGSLALLTGCGAFFFAAAVRERKAVLALVE ENAG
Sequences:
>Translated_404_residues MKLRQIHPLTWGVLFGTFFARLATFFVMPFFAIYLATLGFSASVIGTIFAVTALSGLFMSFFGGTLSDRYGRKQLMLIGI VLNAVTFAGLALATELFWFYMLSMLMGMSRSFLEPASRALISDTTQADQRVIVYNVRYFMINIAAAIGPLLAVVLSLTGV KTAFFVVTAVYVLYGIIISTLFYKYPFEEGDGVKARPRLTETFRVLRDDRTFRAVIIGMIFAIIGYSQFNSTLPQFIALR DGLEDGSRLFAYLLTTNAITVLIVQYPIMRFGIRVSPIKSLFFGISTLSFGLLLIGFATVEWVLFVAMAIFTVGEVLMFT MTDVLTDELAPEHLRGTYFGAMGLTSLGQTIGPIIGGVLLDTFGQSSLPVFGSLALLTGCGAFFFAAAVRERKAVLALVE ENAG >Mature_404_residues MKLRQIHPLTWGVLFGTFFARLATFFVMPFFAIYLATLGFSASVIGTIFAVTALSGLFMSFFGGTLSDRYGRKQLMLIGI VLNAVTFAGLALATELFWFYMLSMLMGMSRSFLEPASRALISDTTQADQRVIVYNVRYFMINIAAAIGPLLAVVLSLTGV KTAFFVVTAVYVLYGIIISTLFYKYPFEEGDGVKARPRLTETFRVLRDDRTFRAVIIGMIFAIIGYSQFNSTLPQFIALR DGLEDGSRLFAYLLTTNAITVLIVQYPIMRFGIRVSPIKSLFFGISTLSFGLLLIGFATVEWVLFVAMAIFTVGEVLMFT MTDVLTDELAPEHLRGTYFGAMGLTSLGQTIGPIIGGVLLDTFGQSSLPVFGSLALLTGCGAFFFAAAVRERKAVLALVE ENAG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. TCR/tet family [H]
Homologues:
Organism=Escherichia coli, GI1787815, Length=355, Percent_Identity=25.9154929577465, Blast_Score=98, Evalue=8e-22, Organism=Escherichia coli, GI87081828, Length=342, Percent_Identity=22.5146198830409, Blast_Score=72, Evalue=7e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 - InterPro: IPR005829 - InterPro: IPR001958 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 44315; Mature: 44315
Theoretical pI: Translated: 9.36; Mature: 9.36
Prosite motif: PS50850 MFS ; PS00216 SUGAR_TRANSPORT_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLRQIHPLTWGVLFGTFFARLATFFVMPFFAIYLATLGFSASVIGTIFAVTALSGLFMS CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH FFGGTLSDRYGRKQLMLIGIVLNAVTFAGLALATELFWFYMLSMLMGMSRSFLEPASRAL HHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH ISDTTQADQRVIVYNVRYFMINIAAAIGPLLAVVLSLTGVKTAFFVVTAVYVLYGIIIST HHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LFYKYPFEEGDGVKARPRLTETFRVLRDDRTFRAVIIGMIFAIIGYSQFNSTLPQFIALR HHHHCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DGLEDGSRLFAYLLTTNAITVLIVQYPIMRFGIRVSPIKSLFFGISTLSFGLLLIGFATV CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH EWVLFVAMAIFTVGEVLMFTMTDVLTDELAPEHLRGTYFGAMGLTSLGQTIGPIIGGVLL HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DTFGQSSLPVFGSLALLTGCGAFFFAAAVRERKAVLALVEENAG HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MKLRQIHPLTWGVLFGTFFARLATFFVMPFFAIYLATLGFSASVIGTIFAVTALSGLFMS CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH FFGGTLSDRYGRKQLMLIGIVLNAVTFAGLALATELFWFYMLSMLMGMSRSFLEPASRAL HHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH ISDTTQADQRVIVYNVRYFMINIAAAIGPLLAVVLSLTGVKTAFFVVTAVYVLYGIIIST HHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LFYKYPFEEGDGVKARPRLTETFRVLRDDRTFRAVIIGMIFAIIGYSQFNSTLPQFIALR HHHHCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DGLEDGSRLFAYLLTTNAITVLIVQYPIMRFGIRVSPIKSLFFGISTLSFGLLLIGFATV CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH EWVLFVAMAIFTVGEVLMFTMTDVLTDELAPEHLRGTYFGAMGLTSLGQTIGPIIGGVLL HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DTFGQSSLPVFGSLALLTGCGAFFFAAAVRERKAVLALVEENAG HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8969508; 9384377 [H]