| Definition | Exiguobacterium sp. AT1b, complete genome. |
|---|---|
| Accession | NC_012673 |
| Length | 2,999,895 |
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The map label for this gene is pbpA [H]
Identifier: 229916424
GI number: 229916424
Start: 648477
End: 650933
Strand: Direct
Name: pbpA [H]
Synonym: EAT1b_0694
Alternate gene names: 229916424
Gene position: 648477-650933 (Clockwise)
Preceding gene: 229916421
Following gene: 229916426
Centisome position: 21.62
GC content: 46.89
Gene sequence:
>2457_bases ATGCTGCAGAAGATTCGAGACTTATGGAATAATCCGACGTCATTGAAAGTACGTCGTTATGCCAATGTTATGTATGATGT GTCGTGGAACGTCCTACTCCTGACCATCATTTCTGTTGTACTCATCGGGTTTTTAGGTGCTGGAATTGGTGTCGGATATT TCGCTTCACTTGTCAAAGATATGCCAACCCCGGCTTATAAAACGATGACTGCGCAAATCAATACGTATACATCGACTTCC AATATTTACTTCGGAAGCGGGGAGCGCATCGGGAACTATACGACCGATGAGGTACGAATCCCGATTCCGGTAGAGAAAGT TTCTCCGTATGTCGTCGATGCACTCCTCGCGACGGAAGATGTCGAATTCTATGAGCACGATGGCGTCGTTCCGAAAGCGA CGTTACGCGCTATTTTACAAGAAGCAACAGGTTCTGAAGATCGCACGGGTGGTTCAACATTGACGCAACAATTGATTAAA AACCAAATGTTGACGAACGAAGTATCATTCGAACGGAAAGCAAAAGAAATTTTACTTGCCCTTCGTCTAGAGAAGGCGAT GGACAAAGATGAAATTTTAAACGCTTATCTGAACGTCGTCTCGTTCGGACGTAACTCGATGGGACGTAACATTTCAGGGA TTGAGGCCGCCGCTCGCGGTGTGTTCAATACTTCGGCAGAAAAATTGACACTTCCACAAGCCGCTTTCCTTGCTGGTATC CCAAAAAACCCATTCTTCTACACACCTTATTATCAAGGTGGCGTCATCAAAGAGGATGTATCGGGTGCGGTCAACCGTAT GAAGACGGTATTGAACCGCATGTACGTTGCAGGGAAAATCACGAAAGAAGAATATGATGCCGCCTATAACTACGACATCA CGCAAGACTTCATGCAGACTCAGACGAAGCCTCGCGATAAATATCCGTACGTGGTAGATGAAGCAGAACTTCAAGCACGC CAAATCGTGACGGATTATCTATTGGAGCAAGATGGGATTGAAATCAATGAATTGAGCTCTGAGGAACAGGACTCTGTCCG TTCGACTTATGCGAAGCGTGCACATAACATGTTGCGTCAAGGTGGGTTCAACATCCGTTTGACATTGGATAAAGAGATTC ACGAAGCGATGCAACAACCGGCTAAAAACGCTGGGAACTTCGGACCGAATCAAACGATTGAAGATGAGAACCGGACACTT CCTGAACAAACGTCTTCTGTCATGATTGAGAATAAGACAGGGAAAGTACTCGGATTCGTCGGGGGCCGCTATATCAACGG TAAGACCGACGATTTGAACCGCGCCTTCTGGGCAGAACGTCAAATCGGGTCGACTGCAAAACCGATTCTTGTCTATTCAA ATGCGATTGAAGCTGGCATGATTACGCCTGCCACTCAAATCATCGACGAAGAGTATTTCTATAAGTTCACGGGTCCGGGA CAACCTAAGAAACAGGTTCAAAACGAAGGGAAAACGTATCGTGGCGCTGTCACAGTGCGCGACGCGCTCAAGCTTTCCTT GAACGTTCCGGCCGTTAAGATTTATGAAGAACGCAACCAAAAACCTGCCGATACGCAGAAATTAGTCGATATGGGAATCC CCGTATCTGAAGGAAACCGTTACGCCTCAGCGATGGCACTTGGTACCGGGGAAGTCAAACCAATCGACTTGGCTGCCTCT TATGCGATGTTAGCGAACTATGGTGAACACGTGGAACCGTACTTCATCCAAGAAATCGAATATCAAGGTGAAGTCATTTA CGAGGCGAAACCGAAGAAAACGCGTATTTTCACAGAACGTACCTCTTATCTCGTAGTGGATATGCTCCGTGACGTCTACA CGTCAGGTACTGCGACATATGCACAGTCATTGCTCAACGTCCCTGGCGATTGGATGGGTAAAACCGGTACAACGAACGAT CAACGCGATTCGTACTTGGTCGGGTCGAACCCGAACGTCACACTCGCCGTCTGGTCCGGTTATGATTCACAACGACTTTC CATGCTAGATAGCTGGGATTATGGTCGTTACTATCAACGGACTCAGCGCATCTGGTCGCAAACGATGAACCGTGTCTATG CGGATGACCCAGAAGCTCTAGGTGTCAGCGCCCGCTTCTCACAACCTTCAAGCGTCACTTCGAAAGACTTCCAAGACTCA GGTTCATTCTCTGAGAAGAAGAAAGTAGAAGAGAAAGAAAAAGAAGAGGAAGAGAAGAAGAAAGAAGAAGAGGCCAAGAA AGAGGCCGAAGAAGCAAAGAAAGAAGCTGAAGAGAAGAAACAAGAAGCCGCTGCCGATGCTGCAGCTAAGAAGAAAGCCG AAGAAGAAGCAAAACAAAAAGCAGATGCCGAGGCAAAGAAAAAAGCTGAGGAAGAAGCGAAGAAGAAAGCTGAAGAAGAG GCTAAACAAGAAGCCGAACAACAGGCTGAAGAAGATGCTGATGCTGACGGTGAATAA
Upstream 100 bases:
>100_bases CATGAGACTTCGGTTTCAAGGTAAGGTGTAGGTTGAATTGTGCTATAATCGAATATATTACTGTCTAAAATAGTTTTACA CCATATTTAAGGAGGCTGTC
Downstream 100 bases:
>100_bases ACAAAGGGTCGACACACGATGTGTCGACCCTTTGTTTGTCTTAATCTTCCATCGTCGAGAGGTCACCTGTTTCGAGATTC AATTCCCAAGCCTTCAAGAC
Product: glycosyl transferase family 51
Products: NA
Alternate protein names: PBP1a; Penicillin-insensitive transglycosylase; Peptidoglycan TGase; Penicillin-sensitive transpeptidase; DD-transpeptidase [H]
Number of amino acids: Translated: 818; Mature: 818
Protein sequence:
>818_residues MLQKIRDLWNNPTSLKVRRYANVMYDVSWNVLLLTIISVVLIGFLGAGIGVGYFASLVKDMPTPAYKTMTAQINTYTSTS NIYFGSGERIGNYTTDEVRIPIPVEKVSPYVVDALLATEDVEFYEHDGVVPKATLRAILQEATGSEDRTGGSTLTQQLIK NQMLTNEVSFERKAKEILLALRLEKAMDKDEILNAYLNVVSFGRNSMGRNISGIEAAARGVFNTSAEKLTLPQAAFLAGI PKNPFFYTPYYQGGVIKEDVSGAVNRMKTVLNRMYVAGKITKEEYDAAYNYDITQDFMQTQTKPRDKYPYVVDEAELQAR QIVTDYLLEQDGIEINELSSEEQDSVRSTYAKRAHNMLRQGGFNIRLTLDKEIHEAMQQPAKNAGNFGPNQTIEDENRTL PEQTSSVMIENKTGKVLGFVGGRYINGKTDDLNRAFWAERQIGSTAKPILVYSNAIEAGMITPATQIIDEEYFYKFTGPG QPKKQVQNEGKTYRGAVTVRDALKLSLNVPAVKIYEERNQKPADTQKLVDMGIPVSEGNRYASAMALGTGEVKPIDLAAS YAMLANYGEHVEPYFIQEIEYQGEVIYEAKPKKTRIFTERTSYLVVDMLRDVYTSGTATYAQSLLNVPGDWMGKTGTTND QRDSYLVGSNPNVTLAVWSGYDSQRLSMLDSWDYGRYYQRTQRIWSQTMNRVYADDPEALGVSARFSQPSSVTSKDFQDS GSFSEKKKVEEKEKEEEEKKKEEEAKKEAEEAKKEAEEKKQEAAADAAAKKKAEEEAKQKADAEAKKKAEEEAKKKAEEE AKQEAEQQAEEDADADGE
Sequences:
>Translated_818_residues MLQKIRDLWNNPTSLKVRRYANVMYDVSWNVLLLTIISVVLIGFLGAGIGVGYFASLVKDMPTPAYKTMTAQINTYTSTS NIYFGSGERIGNYTTDEVRIPIPVEKVSPYVVDALLATEDVEFYEHDGVVPKATLRAILQEATGSEDRTGGSTLTQQLIK NQMLTNEVSFERKAKEILLALRLEKAMDKDEILNAYLNVVSFGRNSMGRNISGIEAAARGVFNTSAEKLTLPQAAFLAGI PKNPFFYTPYYQGGVIKEDVSGAVNRMKTVLNRMYVAGKITKEEYDAAYNYDITQDFMQTQTKPRDKYPYVVDEAELQAR QIVTDYLLEQDGIEINELSSEEQDSVRSTYAKRAHNMLRQGGFNIRLTLDKEIHEAMQQPAKNAGNFGPNQTIEDENRTL PEQTSSVMIENKTGKVLGFVGGRYINGKTDDLNRAFWAERQIGSTAKPILVYSNAIEAGMITPATQIIDEEYFYKFTGPG QPKKQVQNEGKTYRGAVTVRDALKLSLNVPAVKIYEERNQKPADTQKLVDMGIPVSEGNRYASAMALGTGEVKPIDLAAS YAMLANYGEHVEPYFIQEIEYQGEVIYEAKPKKTRIFTERTSYLVVDMLRDVYTSGTATYAQSLLNVPGDWMGKTGTTND QRDSYLVGSNPNVTLAVWSGYDSQRLSMLDSWDYGRYYQRTQRIWSQTMNRVYADDPEALGVSARFSQPSSVTSKDFQDS GSFSEKKKVEEKEKEEEEKKKEEEAKKEAEEAKKEAEEKKQEAAADAAAKKKAEEEAKQKADAEAKKKAEEEAKKKAEEE AKQEAEQQAEEDADADGE >Mature_818_residues MLQKIRDLWNNPTSLKVRRYANVMYDVSWNVLLLTIISVVLIGFLGAGIGVGYFASLVKDMPTPAYKTMTAQINTYTSTS NIYFGSGERIGNYTTDEVRIPIPVEKVSPYVVDALLATEDVEFYEHDGVVPKATLRAILQEATGSEDRTGGSTLTQQLIK NQMLTNEVSFERKAKEILLALRLEKAMDKDEILNAYLNVVSFGRNSMGRNISGIEAAARGVFNTSAEKLTLPQAAFLAGI PKNPFFYTPYYQGGVIKEDVSGAVNRMKTVLNRMYVAGKITKEEYDAAYNYDITQDFMQTQTKPRDKYPYVVDEAELQAR QIVTDYLLEQDGIEINELSSEEQDSVRSTYAKRAHNMLRQGGFNIRLTLDKEIHEAMQQPAKNAGNFGPNQTIEDENRTL PEQTSSVMIENKTGKVLGFVGGRYINGKTDDLNRAFWAERQIGSTAKPILVYSNAIEAGMITPATQIIDEEYFYKFTGPG QPKKQVQNEGKTYRGAVTVRDALKLSLNVPAVKIYEERNQKPADTQKLVDMGIPVSEGNRYASAMALGTGEVKPIDLAAS YAMLANYGEHVEPYFIQEIEYQGEVIYEAKPKKTRIFTERTSYLVVDMLRDVYTSGTATYAQSLLNVPGDWMGKTGTTND QRDSYLVGSNPNVTLAVWSGYDSQRLSMLDSWDYGRYYQRTQRIWSQTMNRVYADDPEALGVSARFSQPSSVTSKDFQDS GSFSEKKKVEEKEKEEEEKKKEEEAKKEAEEAKKEAEEKKQEAAADAAAKKKAEEEAKQKADAEAKKKAEEEAKKKAEEE AKQEAEQQAEEDADADGE
Specific function: Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal
COG id: COG0744
COG function: function code M; Membrane carboxypeptidase (penicillin-binding protein)
Gene ontology:
Cell location: Cell membrane; Single-pass type II membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI87082258, Length=351, Percent_Identity=30.7692307692308, Blast_Score=141, Evalue=2e-34, Organism=Escherichia coli, GI1788867, Length=617, Percent_Identity=24.7974068071313, Blast_Score=127, Evalue=4e-30, Organism=Escherichia coli, GI1786343, Length=155, Percent_Identity=41.2903225806452, Blast_Score=105, Evalue=9e-24, Organism=Escherichia coli, GI1789601, Length=177, Percent_Identity=31.638418079096, Blast_Score=85, Evalue=2e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001264 - InterPro: IPR011816 - InterPro: IPR001460 [H]
Pfam domain/function: PF00912 Transgly; PF00905 Transpeptidase [H]
EC number: 2.4.2.-; 3.4.-.- [C]
Molecular weight: Translated: 91702; Mature: 91702
Theoretical pI: Translated: 4.81; Mature: 4.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLQKIRDLWNNPTSLKVRRYANVMYDVSWNVLLLTIISVVLIGFLGAGIGVGYFASLVKD CCHHHHHHHCCCCCEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MPTPAYKTMTAQINTYTSTSNIYFGSGERIGNYTTDEVRIPIPVEKVSPYVVDALLATED CCCCCHHEEEEEEEEEECCCCEEECCCCCCCCCCCCCEEECCCHHHHCHHHHHHHHHHHC VEFYEHDGVVPKATLRAILQEATGSEDRTGGSTLTQQLIKNQMLTNEVSFERKAKEILLA CHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LRLEKAMDKDEILNAYLNVVSFGRNSMGRNISGIEAAARGVFNTSAEKLTLPQAAFLAGI HHHHHHCCHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHCCCCHHEECCHHHHHHCC PKNPFFYTPYYQGGVIKEDVSGAVNRMKTVLNRMYVAGKITKEEYDAAYNYDITQDFMQT CCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHH QTKPRDKYPYVVDEAELQARQIVTDYLLEQDGIEINELSSEEQDSVRSTYAKRAHNMLRQ CCCCCCCCCEEECHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHH GGFNIRLTLDKEIHEAMQQPAKNAGNFGPNQTIEDENRTLPEQTSSVMIENKTGKVLGFV CCCEEEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHCCEEEECCCCCEEEEE GGRYINGKTDDLNRAFWAERQIGSTAKPILVYSNAIEAGMITPATQIIDEEYFYKFTGPG CCEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHCHHHEEEECCCC QPKKQVQNEGKTYRGAVTVRDALKLSLNVPAVKIYEERNQKPADTQKLVDMGIPVSEGNR CHHHHHHHCCCEEECEEEEEHHHHEECCCCEEEEEHHCCCCCCHHHHHHHHCCCCCCCCC YASAMALGTGEVKPIDLAASYAMLANYGEHVEPYFIQEIEYQGEVIYEAKPKKTRIFTER EEHEEEECCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEEECCCCCCEEEHHH TSYLVVDMLRDVYTSGTATYAQSLLNVPGDWMGKTGTTNDQRDSYLVGSNPNVTLAVWSG HHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEECC YDSQRLSMLDSWDYGRYYQRTQRIWSQTMNRVYADDPEALGVSARFSQPSSVTSKDFQDS CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCC GSFSEKKKVEEKEKEEEEKKKEEEAKKEAEEAKKEAEEKKQEAAADAAAKKKAEEEAKQK CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ADAEAKKKAEEEAKKKAEEEAKQEAEQQAEEDADADGE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MLQKIRDLWNNPTSLKVRRYANVMYDVSWNVLLLTIISVVLIGFLGAGIGVGYFASLVKD CCHHHHHHHCCCCCEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MPTPAYKTMTAQINTYTSTSNIYFGSGERIGNYTTDEVRIPIPVEKVSPYVVDALLATED CCCCCHHEEEEEEEEEECCCCEEECCCCCCCCCCCCCEEECCCHHHHCHHHHHHHHHHHC VEFYEHDGVVPKATLRAILQEATGSEDRTGGSTLTQQLIKNQMLTNEVSFERKAKEILLA CHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LRLEKAMDKDEILNAYLNVVSFGRNSMGRNISGIEAAARGVFNTSAEKLTLPQAAFLAGI HHHHHHCCHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHCCCCHHEECCHHHHHHCC PKNPFFYTPYYQGGVIKEDVSGAVNRMKTVLNRMYVAGKITKEEYDAAYNYDITQDFMQT CCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHH QTKPRDKYPYVVDEAELQARQIVTDYLLEQDGIEINELSSEEQDSVRSTYAKRAHNMLRQ CCCCCCCCCEEECHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHH GGFNIRLTLDKEIHEAMQQPAKNAGNFGPNQTIEDENRTLPEQTSSVMIENKTGKVLGFV CCCEEEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHCCEEEECCCCCEEEEE GGRYINGKTDDLNRAFWAERQIGSTAKPILVYSNAIEAGMITPATQIIDEEYFYKFTGPG CCEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHCHHHEEEECCCC QPKKQVQNEGKTYRGAVTVRDALKLSLNVPAVKIYEERNQKPADTQKLVDMGIPVSEGNR CHHHHHHHCCCEEECEEEEEHHHHEECCCCEEEEEHHCCCCCCHHHHHHHHCCCCCCCCC YASAMALGTGEVKPIDLAASYAMLANYGEHVEPYFIQEIEYQGEVIYEAKPKKTRIFTER EEHEEEECCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEEECCCCCCEEEHHH TSYLVVDMLRDVYTSGTATYAQSLLNVPGDWMGKTGTTNDQRDSYLVGSNPNVTLAVWSG HHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEECC YDSQRLSMLDSWDYGRYYQRTQRIWSQTMNRVYADDPEALGVSARFSQPSSVTSKDFQDS CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCC GSFSEKKKVEEKEKEEEEKKKEEEAKKEAEEAKKEAEEKKQEAAADAAAKKKAEEEAKQK CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ADAEAKKKAEEEAKKKAEEEAKQEAEQQAEEDADADGE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Transferases; Acyltransferases; Aminoacyltransferases [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA