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The map label for this gene is ybeY [C]

Identifier: 229916329

GI number: 229916329

Start: 549436

End: 549912

Strand: Reverse

Name: ybeY [C]

Synonym: EAT1b_0598

Alternate gene names: 229916329

Gene position: 549912-549436 (Counterclockwise)

Preceding gene: 229916330

Following gene: 229916328

Centisome position: 18.33

GC content: 47.59

Gene sequence:

>477_bases
ATGCAAATCATCTCGAACGATGAACATGAATTGTTAACAACATCTCAAATCGAGCTCGTCGAGTCGATTTTACAACATGC
CGCTCAATTAGAAGGGGTGGAAGAACCAAGCGAATTGTCGGTCACGTATTTAACAAATGCGGAAATCCATGAAGTGAACC
GAGAATGGCGTGGCAAGGATGCCCCGACCGATGTCATCAGTTTCGCATTTGATGAGATGGGGGATGAGGAGATGGATTTC
ATGCTCGATGAAGATGAACCACATCTTCTCGGTGACCTCGTCATCTCGGTAGAACGTTGCCGAGAACAGGCGGCTGACTA
TGGTCATTCGTTTGAGCGGGAGCTCGGCTTTTTAGCAATTCATGGATTCCTCCATTTGCTTGGGTATGATCATATGACAC
CCGAGGAAGAAGCGGAGATGACGGCAAGGCAAGAAGAAGTGCTCACTCATTTTGAGTTGAAGCGAGGCAACGTGTGA

Upstream 100 bases:

>100_bases
AAAGAAATTTGGCGCGTCGGAGAGAGTGCGTGTGAGACACTGACCGGCTTGTTCCACGAACGAATCGAATACCCAGAATT
AAAGAAAGAGGGAGAATTAC

Downstream 100 bases:

>100_bases
GACCGTTCCGTGTGGCATGTGAGGGGATCCTCCATGCCGTTCGTTCGGAACGAAACATGCGTCTCCATCTCCTATCGGCT
CTTCTTGTATTCATCTTTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MQIISNDEHELLTTSQIELVESILQHAAQLEGVEEPSELSVTYLTNAEIHEVNREWRGKDAPTDVISFAFDEMGDEEMDF
MLDEDEPHLLGDLVISVERCREQAADYGHSFERELGFLAIHGFLHLLGYDHMTPEEEAEMTARQEEVLTHFELKRGNV

Sequences:

>Translated_158_residues
MQIISNDEHELLTTSQIELVESILQHAAQLEGVEEPSELSVTYLTNAEIHEVNREWRGKDAPTDVISFAFDEMGDEEMDF
MLDEDEPHLLGDLVISVERCREQAADYGHSFERELGFLAIHGFLHLLGYDHMTPEEEAEMTARQEEVLTHFELKRGNV
>Mature_158_residues
MQIISNDEHELLTTSQIELVESILQHAAQLEGVEEPSELSVTYLTNAEIHEVNREWRGKDAPTDVISFAFDEMGDEEMDF
MLDEDEPHLLGDLVISVERCREQAADYGHSFERELGFLAIHGFLHLLGYDHMTPEEEAEMTARQEEVLTHFELKRGNV

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=105, Percent_Identity=38.0952380952381, Blast_Score=74, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_EXISA (C4L408)

Other databases:

- EMBL:   CP001615
- RefSeq:   YP_002884975.1
- ProteinModelPortal:   C4L408
- GeneID:   7871337
- GenomeReviews:   CP001615_GR
- KEGG:   eat:EAT1b_0598
- OMA:   LNGYDHM
- ProtClustDB:   CLSK2489146
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 18128; Mature: 18128

Theoretical pI: Translated: 4.01; Mature: 4.01

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIISNDEHELLTTSQIELVESILQHAAQLEGVEEPSELSVTYLTNAEIHEVNREWRGKD
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCC
APTDVISFAFDEMGDEEMDFMLDEDEPHLLGDLVISVERCREQAADYGHSFERELGFLAI
CCHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
HGFLHLLGYDHMTPEEEAEMTARQEEVLTHFELKRGNV
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MQIISNDEHELLTTSQIELVESILQHAAQLEGVEEPSELSVTYLTNAEIHEVNREWRGKD
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCC
APTDVISFAFDEMGDEEMDFMLDEDEPHLLGDLVISVERCREQAADYGHSFERELGFLAI
CCHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
HGFLHLLGYDHMTPEEEAEMTARQEEVLTHFELKRGNV
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA