| Definition | Exiguobacterium sp. AT1b, complete genome. |
|---|---|
| Accession | NC_012673 |
| Length | 2,999,895 |
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The map label for this gene is bfmBAA [H]
Identifier: 229916238
GI number: 229916238
Start: 460364
End: 461371
Strand: Reverse
Name: bfmBAA [H]
Synonym: EAT1b_0507
Alternate gene names: 229916238
Gene position: 461371-460364 (Counterclockwise)
Preceding gene: 229916239
Following gene: 229916237
Centisome position: 15.38
GC content: 50.6
Gene sequence:
>1008_bases ATGGAACAGATGACTGTAAACTCATATGAAGAGCTTGGTTTAACAAAACAAGATTTATTGGCGATGTACGAAACGATGGT ACGTGCCCGCAAAATCGATGAACGGATGTGGAAGTTGAACCGCGCCGGGAAAATCCCATTCGTCGTCTCATGTCAAGGAC AAGAAGCGGCGCAAGTCGGTGCGGCGTTCGCACTCGAAAAAGGAATCGACTACGTCTTGCCTTATTATCGTGATGTGGCG GTCGTCCTTCACTTCGGTCAAACGTCAAGAGACTTGATGTTGTCGGCATTCGCGAAAGCGGAAGACCCGAACTCAGGTGG TCGTCAGATGCCTGGTCACTTCGGATCGAAAGCACATCGCATCGTAACGGGTTCATCTCCGGTCACGACACAAGTACCTC ATGCAGTCGGGATCGCACTTGCGGCGAAGATGAAAAAAGAAGAACTCGTCACGTTCGTTTCGTTCGGAGAAGGGTCTTCG AACCAAGGAGACTTCCATGAAGGCGCAAACTTTGCAGGTGTCCACAAGTTGCCGGTCATCTTGTTCTGTGAGAACAACAA GTATGCGATTTCGGTTCCTCTTACGAAACAGTTGGCATGTGAGCGCGTATCAGACCGTGCAAAAGGTTACGGCATGCCAG GTGTGACAGTCGACGGGACAGACCCGATCGCCGTCTATGCGGTCGTGAAGGAAGCGCGTGAACGTGCACTTCGCGGAGAA GGACCGACATTAATCGAAGCAGAAGTTGAACGTCTCGTGCCACACTCATCGGATGACGATGACAAAGCGTACCGTTCAGC TGAAGAATTGGCGGGGTTAAAAGAGCGGGATGGCATTCAATTGTTCCGTCAACGACTTGTGAACGACGGAATCGCAACGG CGGAGACACTTGCTGAAATCGATGCACAAATCGATGCTGAAGTGAATGAAGCGACGACATATGCGGACAAAGCACCGTAT GCATCGCCTGAATCTGCACTAGATTACGTCTATGAGGAGGAAAAATGA
Upstream 100 bases:
>100_bases GGGACAACTTGTGCACCCGCATCCTGCACTGAGCGAAGCCTTCCAAGAAGCGGCTCTTGCCGTCGATGGATTACCGATTC ACGCCTAAGGAGGAACAAGG
Downstream 100 bases:
>100_bases TGAAAACGTTTATCGAAGCGATCAATGAAGCGATTCATGAGGAAATGGAGCGCGACGAAAACGTCTTCGTCGTCGGGGAA GACGTCGGCGTTCGTGGTGG
Product: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring)
Products: NA
Alternate protein names: Branched-chain alpha-keto acid dehydrogenase E1 component alpha chain; BCKDH E1-alpha [H]
Number of amino acids: Translated: 335; Mature: 335
Protein sequence:
>335_residues MEQMTVNSYEELGLTKQDLLAMYETMVRARKIDERMWKLNRAGKIPFVVSCQGQEAAQVGAAFALEKGIDYVLPYYRDVA VVLHFGQTSRDLMLSAFAKAEDPNSGGRQMPGHFGSKAHRIVTGSSPVTTQVPHAVGIALAAKMKKEELVTFVSFGEGSS NQGDFHEGANFAGVHKLPVILFCENNKYAISVPLTKQLACERVSDRAKGYGMPGVTVDGTDPIAVYAVVKEARERALRGE GPTLIEAEVERLVPHSSDDDDKAYRSAEELAGLKERDGIQLFRQRLVNDGIATAETLAEIDAQIDAEVNEATTYADKAPY ASPESALDYVYEEEK
Sequences:
>Translated_335_residues MEQMTVNSYEELGLTKQDLLAMYETMVRARKIDERMWKLNRAGKIPFVVSCQGQEAAQVGAAFALEKGIDYVLPYYRDVA VVLHFGQTSRDLMLSAFAKAEDPNSGGRQMPGHFGSKAHRIVTGSSPVTTQVPHAVGIALAAKMKKEELVTFVSFGEGSS NQGDFHEGANFAGVHKLPVILFCENNKYAISVPLTKQLACERVSDRAKGYGMPGVTVDGTDPIAVYAVVKEARERALRGE GPTLIEAEVERLVPHSSDDDDKAYRSAEELAGLKERDGIQLFRQRLVNDGIATAETLAEIDAQIDAEVNEATTYADKAPY ASPESALDYVYEEEK >Mature_335_residues MEQMTVNSYEELGLTKQDLLAMYETMVRARKIDERMWKLNRAGKIPFVVSCQGQEAAQVGAAFALEKGIDYVLPYYRDVA VVLHFGQTSRDLMLSAFAKAEDPNSGGRQMPGHFGSKAHRIVTGSSPVTTQVPHAVGIALAAKMKKEELVTFVSFGEGSS NQGDFHEGANFAGVHKLPVILFCENNKYAISVPLTKQLACERVSDRAKGYGMPGVTVDGTDPIAVYAVVKEARERALRGE GPTLIEAEVERLVPHSSDDDDKAYRSAEELAGLKERDGIQLFRQRLVNDGIATAETLAEIDAQIDAEVNEATTYADKAPY ASPESALDYVYEEEK
Specific function: The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components:branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltran
COG id: COG1071
COG function: function code C; Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the BCKDHA family [H]
Homologues:
Organism=Homo sapiens, GI11386135, Length=329, Percent_Identity=36.7781155015198, Blast_Score=202, Evalue=4e-52, Organism=Homo sapiens, GI258645172, Length=329, Percent_Identity=36.7781155015198, Blast_Score=198, Evalue=6e-51, Organism=Homo sapiens, GI4885543, Length=326, Percent_Identity=31.2883435582822, Blast_Score=142, Evalue=4e-34, Organism=Homo sapiens, GI4505685, Length=326, Percent_Identity=30.9815950920245, Blast_Score=142, Evalue=5e-34, Organism=Homo sapiens, GI291084742, Length=326, Percent_Identity=30.9815950920245, Blast_Score=141, Evalue=7e-34, Organism=Homo sapiens, GI291084744, Length=329, Percent_Identity=29.7872340425532, Blast_Score=135, Evalue=5e-32, Organism=Homo sapiens, GI291084757, Length=320, Percent_Identity=28.4375, Blast_Score=100, Evalue=2e-21, Organism=Caenorhabditis elegans, GI86563355, Length=330, Percent_Identity=36.6666666666667, Blast_Score=204, Evalue=4e-53, Organism=Caenorhabditis elegans, GI86563357, Length=330, Percent_Identity=36.6666666666667, Blast_Score=204, Evalue=4e-53, Organism=Caenorhabditis elegans, GI17536047, Length=320, Percent_Identity=30.9375, Blast_Score=136, Evalue=2e-32, Organism=Caenorhabditis elegans, GI32564172, Length=320, Percent_Identity=30.9375, Blast_Score=136, Evalue=2e-32, Organism=Saccharomyces cerevisiae, GI6321026, Length=333, Percent_Identity=32.1321321321321, Blast_Score=144, Evalue=2e-35, Organism=Drosophila melanogaster, GI21355903, Length=259, Percent_Identity=37.8378378378378, Blast_Score=169, Evalue=2e-42, Organism=Drosophila melanogaster, GI24639748, Length=306, Percent_Identity=31.3725490196078, Blast_Score=125, Evalue=3e-29, Organism=Drosophila melanogaster, GI24639744, Length=310, Percent_Identity=30, Blast_Score=119, Evalue=2e-27, Organism=Drosophila melanogaster, GI28571106, Length=310, Percent_Identity=30, Blast_Score=119, Evalue=2e-27, Organism=Drosophila melanogaster, GI24639740, Length=310, Percent_Identity=30, Blast_Score=119, Evalue=3e-27, Organism=Drosophila melanogaster, GI24639746, Length=267, Percent_Identity=30.7116104868914, Blast_Score=114, Evalue=1e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001017 [H]
Pfam domain/function: PF00676 E1_dh [H]
EC number: =1.2.4.4 [H]
Molecular weight: Translated: 36685; Mature: 36685
Theoretical pI: Translated: 4.82; Mature: 4.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEQMTVNSYEELGLTKQDLLAMYETMVRARKIDERMWKLNRAGKIPFVVSCQGQEAAQVG CCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHH AAFALEKGIDYVLPYYRDVAVVLHFGQTSRDLMLSAFAKAEDPNSGGRQMPGHFGSKAHR HHHHHHHCCHHHHHHHHCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCE IVTGSSPVTTQVPHAVGIALAAKMKKEELVTFVSFGEGSSNQGDFHEGANFAGVHKLPVI EEECCCCCCCCCCHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCHHCCCCCCCEECCEEE LFCENNKYAISVPLTKQLACERVSDRAKGYGMPGVTVDGTDPIAVYAVVKEARERALRGE EEECCCCEEEECCCHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCC GPTLIEAEVERLVPHSSDDDDKAYRSAEELAGLKERDGIQLFRQRLVNDGIATAETLAEI CCEEHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHH DAQIDAEVNEATTYADKAPYASPESALDYVYEEEK HHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCC >Mature Secondary Structure MEQMTVNSYEELGLTKQDLLAMYETMVRARKIDERMWKLNRAGKIPFVVSCQGQEAAQVG CCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHH AAFALEKGIDYVLPYYRDVAVVLHFGQTSRDLMLSAFAKAEDPNSGGRQMPGHFGSKAHR HHHHHHHCCHHHHHHHHCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCE IVTGSSPVTTQVPHAVGIALAAKMKKEELVTFVSFGEGSSNQGDFHEGANFAGVHKLPVI EEECCCCCCCCCCHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCHHCCCCCCCEECCEEE LFCENNKYAISVPLTKQLACERVSDRAKGYGMPGVTVDGTDPIAVYAVVKEARERALRGE EEECCCCEEEECCCHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCC GPTLIEAEVERLVPHSSDDDDKAYRSAEELAGLKERDGIQLFRQRLVNDGIATAETLAEI CCEEHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHH DAQIDAEVNEATTYADKAPYASPESALDYVYEEEK HHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8504804; 8969508; 9384377 [H]