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The map label for this gene is yodJ [H]

Identifier: 229916118

GI number: 229916118

Start: 348381

End: 349241

Strand: Reverse

Name: yodJ [H]

Synonym: EAT1b_0387

Alternate gene names: 229916118

Gene position: 349241-348381 (Counterclockwise)

Preceding gene: 229916119

Following gene: 229916117

Centisome position: 11.64

GC content: 45.3

Gene sequence:

>861_bases
ATGCGTTATCCATCGATTTTGATGGTTTGCGGCGCCTTGACGTTCATGTTAGCCGGTTGTACGACAAACGAGCAAGTTGA
ACCGAAAGAACCAACGACACAGTCATCAACAATAGATGAACCAAAGACAGAACCAAATGAACCGACTTCGGATCGTGAAG
ATGAAACGGTCTCCGAGTCACCTTCTGAAGAGGAGACGTCGGACGAGACTGAACAGCCGACCGAACCAGTAGAGGAAGAA
CCTGTGGCACCTAGTCAACCGATTGAAACGGATGGTGTGGCCAATTTGGAATTAGATGAATTGATTCTTGTAAACAAGCA
AATTGCATTGCCTGCCGACTATCAGCCAAGTGATTTAGTAGAGGCGAATATCGATTTTGTCGACTCGACAGTCGGTGAAC
GTCGAATGTTACGTAAAGAGGCTGCTCAGGCGATTGAAGGTCTAATGAAAGATGCGAAGGCAGCAGGAATTGATTTGAAA
GGGACGAGTGCGTTTCGTTCATACGCCTATCAAGTCAATCTCTTCAATGCTTATGTCGAACGAGATGGCAAAGAGCAAGC
CATGAAATACTCCGCACCACCAGGTCATTCTGAACATCAAACAGGACTTGCGATTGACGTATCGAGCGCCTCAGTCAACT
ATCAACTGACTCAAAGTCTCGGTGAAACGGTTGAAGGAAAATGGCTAGCCGATCATGCTCACGAGTATGGTTTTATCATC
CGTTACCAAAAAGAGTTTGAGGAAGAGACCGGGTATATGTACGAACCATGGCATTTACGTTATATCGGTATGGAGCATGC
GAAACAGGTACATGCATTGAATCAGCCATATGATCGCTATATTGCGGAATTTATGAAATAA

Upstream 100 bases:

>100_bases
GAACGTCATGAACCCTGTCTAAGAATCTTCTGTCTTCGTACCGTCAGTGTGGTATCATATCTTGACGGTACTTTTTGTTA
TCTAGAAAGGGGAAGATCGC

Downstream 100 bases:

>100_bases
GGGGAATTGCGATGCCATATGTGACAGAAATCATGATTATTATTTTAAGTTATCTACTTGGTGCCATTCCGTTTGCCCTC
ATCATCGGCAAGCTCGGCTA

Product: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 286; Mature: 286

Protein sequence:

>286_residues
MRYPSILMVCGALTFMLAGCTTNEQVEPKEPTTQSSTIDEPKTEPNEPTSDREDETVSESPSEEETSDETEQPTEPVEEE
PVAPSQPIETDGVANLELDELILVNKQIALPADYQPSDLVEANIDFVDSTVGERRMLRKEAAQAIEGLMKDAKAAGIDLK
GTSAFRSYAYQVNLFNAYVERDGKEQAMKYSAPPGHSEHQTGLAIDVSSASVNYQLTQSLGETVEGKWLADHAHEYGFII
RYQKEFEEETGYMYEPWHLRYIGMEHAKQVHALNQPYDRYIAEFMK

Sequences:

>Translated_286_residues
MRYPSILMVCGALTFMLAGCTTNEQVEPKEPTTQSSTIDEPKTEPNEPTSDREDETVSESPSEEETSDETEQPTEPVEEE
PVAPSQPIETDGVANLELDELILVNKQIALPADYQPSDLVEANIDFVDSTVGERRMLRKEAAQAIEGLMKDAKAAGIDLK
GTSAFRSYAYQVNLFNAYVERDGKEQAMKYSAPPGHSEHQTGLAIDVSSASVNYQLTQSLGETVEGKWLADHAHEYGFII
RYQKEFEEETGYMYEPWHLRYIGMEHAKQVHALNQPYDRYIAEFMK
>Mature_286_residues
MRYPSILMVCGALTFMLAGCTTNEQVEPKEPTTQSSTIDEPKTEPNEPTSDREDETVSESPSEEETSDETEQPTEPVEEE
PVAPSQPIETDGVANLELDELILVNKQIALPADYQPSDLVEANIDFVDSTVGERRMLRKEAAQAIEGLMKDAKAAGIDLK
GTSAFRSYAYQVNLFNAYVERDGKEQAMKYSAPPGHSEHQTGLAIDVSSASVNYQLTQSLGETVEGKWLADHAHEYGFII
RYQKEFEEETGYMYEPWHLRYIGMEHAKQVHALNQPYDRYIAEFMK

Specific function: Unknown

COG id: COG1876

COG function: function code M; D-alanyl-D-alanine carboxypeptidase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M15B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009045
- InterPro:   IPR003709 [H]

Pfam domain/function: PF02557 VanY [H]

EC number: NA

Molecular weight: Translated: 32141; Mature: 32141

Theoretical pI: Translated: 4.15; Mature: 4.15

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYPSILMVCGALTFMLAGCTTNEQVEPKEPTTQSSTIDEPKTEPNEPTSDREDETVSES
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCC
PSEEETSDETEQPTEPVEEEPVAPSQPIETDGVANLELDELILVNKQIALPADYQPSDLV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHEEEECCCEECCCCCCCHHHH
EANIDFVDSTVGERRMLRKEAAQAIEGLMKDAKAAGIDLKGTSAFRSYAYQVNLFNAYVE
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHEEHHHHHHHH
RDGKEQAMKYSAPPGHSEHQTGLAIDVSSASVNYQLTQSLGETVEGKWLADHAHEYGFII
CCCHHHHHCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHCCCCEEE
RYQKEFEEETGYMYEPWHLRYIGMEHAKQVHALNQPYDRYIAEFMK
EEHHHHHHHCCCEECCEEEEEECHHHHHHHHHCCCCHHHHHHHHHC
>Mature Secondary Structure
MRYPSILMVCGALTFMLAGCTTNEQVEPKEPTTQSSTIDEPKTEPNEPTSDREDETVSES
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCC
PSEEETSDETEQPTEPVEEEPVAPSQPIETDGVANLELDELILVNKQIALPADYQPSDLV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHEEEECCCEECCCCCCCHHHH
EANIDFVDSTVGERRMLRKEAAQAIEGLMKDAKAAGIDLKGTSAFRSYAYQVNLFNAYVE
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHEEHHHHHHHH
RDGKEQAMKYSAPPGHSEHQTGLAIDVSSASVNYQLTQSLGETVEGKWLADHAHEYGFII
CCCHHHHHCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHCCCCEEE
RYQKEFEEETGYMYEPWHLRYIGMEHAKQVHALNQPYDRYIAEFMK
EEHHHHHHHCCCEECCEEEEEECHHHHHHHHHCCCCHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]