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The map label for this gene is glpR [H]

Identifier: 229916116

GI number: 229916116

Start: 346805

End: 347575

Strand: Reverse

Name: glpR [H]

Synonym: EAT1b_0385

Alternate gene names: 229916116

Gene position: 347575-346805 (Counterclockwise)

Preceding gene: 229916117

Following gene: 229916115

Centisome position: 11.59

GC content: 48.38

Gene sequence:

>771_bases
GTGTCTTTAATCGGTGAAGAGCGTAAACAGAAAATTGTAGAATGGATCGAACGAGAAGGCAAAGTAAAGACGAGTGAGTT
GATCGAGCGCTTGAACGTATCGGGGGAATCGATTCGACGTTATTTAGAAGAGTTAGAAAAAGAACATCGAATCAAACGTG
TATACGGGGGAGCGGTCCTTCATCAGAGCATGTCCTTTCAGCCCATCGTGATTGCAAACATGGATGGAATTCGTCGAATC
GCCTATACCGCATTTCAGCTGATTCCAGATGATACATTATTATATATCGGACATGGGGTTGCAGCAGAGCAAGTGGCATC
CCGGTTGCGTGGTCGCAATGTGACGGTCGTGACGCCATCGTTGACGGTGGCGAAGGCGTTGTTTGAACAGCGAGCAAAAG
GTGTGCTCGGTGGCGAAATTCAGCTGTTAGGTGGTACAATCGACCCGAAACATCTCGTGACGACAGGTGAGCAAGTCCTG
GCGCAACTTCAGACTTACATGTTCGACCTTGCCATCTTGTCCGTCGAAGGAGTTGATGCGTCACTAGGTTTAACGTGTGA
CGCGTTTGGCCTCGCCAGTATCACCCAGTCGGTGATGTCACAAAGTCGCGAGACGTTCTTATTGACAGACCATACCCAAC
TGAATCAACAAAAGCGGTATCGCGTCTGTGATTTTTCGAAGGTGACGGCGATTATTTCTGATTTTCCTGAACCTCAAGAT
TTCAAAGGCGTCTTAGCCGAACATGGTGTGGACTGGAAGTTCGCACCGTAA

Upstream 100 bases:

>100_bases
AACATGTTGGATTTGCTCGTTCTTTACTTTCAATTTACGTTAAATTTACATGCGTTCGTTACACTAGAAAAGGAAAGATT
ATTGTGGAGGAGGCAGGGAC

Downstream 100 bases:

>100_bases
AGGGAGCGATTGAATGAATGTAGAAGTGATTGTCACTACACTGACGGAAGCTATACAGGCTGAGCAATTCGGTGCGAAAC
GACTCGAACTGATTGCAGAT

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 255

Protein sequence:

>256_residues
MSLIGEERKQKIVEWIEREGKVKTSELIERLNVSGESIRRYLEELEKEHRIKRVYGGAVLHQSMSFQPIVIANMDGIRRI
AYTAFQLIPDDTLLYIGHGVAAEQVASRLRGRNVTVVTPSLTVAKALFEQRAKGVLGGEIQLLGGTIDPKHLVTTGEQVL
AQLQTYMFDLAILSVEGVDASLGLTCDAFGLASITQSVMSQSRETFLLTDHTQLNQQKRYRVCDFSKVTAIISDFPEPQD
FKGVLAEHGVDWKFAP

Sequences:

>Translated_256_residues
MSLIGEERKQKIVEWIEREGKVKTSELIERLNVSGESIRRYLEELEKEHRIKRVYGGAVLHQSMSFQPIVIANMDGIRRI
AYTAFQLIPDDTLLYIGHGVAAEQVASRLRGRNVTVVTPSLTVAKALFEQRAKGVLGGEIQLLGGTIDPKHLVTTGEQVL
AQLQTYMFDLAILSVEGVDASLGLTCDAFGLASITQSVMSQSRETFLLTDHTQLNQQKRYRVCDFSKVTAIISDFPEPQD
FKGVLAEHGVDWKFAP
>Mature_255_residues
SLIGEERKQKIVEWIEREGKVKTSELIERLNVSGESIRRYLEELEKEHRIKRVYGGAVLHQSMSFQPIVIANMDGIRRIA
YTAFQLIPDDTLLYIGHGVAAEQVASRLRGRNVTVVTPSLTVAKALFEQRAKGVLGGEIQLLGGTIDPKHLVTTGEQVLA
QLQTYMFDLAILSVEGVDASLGLTCDAFGLASITQSVMSQSRETFLLTDHTQLNQQKRYRVCDFSKVTAIISDFPEPQDF
KGVLAEHGVDWKFAP

Specific function: Repressor of the glycerol-3-phosphate regulon [H]

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789829, Length=255, Percent_Identity=28.2352941176471, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1789059, Length=252, Percent_Identity=27.7777777777778, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1789519, Length=252, Percent_Identity=27.3809523809524, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI87082344, Length=247, Percent_Identity=24.6963562753036, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1788069, Length=238, Percent_Identity=26.4705882352941, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1789170, Length=236, Percent_Identity=28.3898305084746, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI226510968, Length=243, Percent_Identity=26.7489711934156, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1787540, Length=229, Percent_Identity=24.4541484716157, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 28546; Mature: 28415

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLIGEERKQKIVEWIEREGKVKTSELIERLNVSGESIRRYLEELEKEHRIKRVYGGAVL
CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
HQSMSFQPIVIANMDGIRRIAYTAFQLIPDDTLLYIGHGVAAEQVASRLRGRNVTVVTPS
HHCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEECCC
LTVAKALFEQRAKGVLGGEIQLLGGTIDPKHLVTTGEQVLAQLQTYMFDLAILSVEGVDA
HHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCC
SLGLTCDAFGLASITQSVMSQSRETFLLTDHTQLNQQKRYRVCDFSKVTAIISDFPEPQD
CCCCEECHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHCCCCCHHHHHHHHHCCCCCHH
FKGVLAEHGVDWKFAP
HHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SLIGEERKQKIVEWIEREGKVKTSELIERLNVSGESIRRYLEELEKEHRIKRVYGGAVL
CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
HQSMSFQPIVIANMDGIRRIAYTAFQLIPDDTLLYIGHGVAAEQVASRLRGRNVTVVTPS
HHCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEECCC
LTVAKALFEQRAKGVLGGEIQLLGGTIDPKHLVTTGEQVLAQLQTYMFDLAILSVEGVDA
HHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCC
SLGLTCDAFGLASITQSVMSQSRETFLLTDHTQLNQQKRYRVCDFSKVTAIISDFPEPQD
CCCCEECHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHCCCCCHHHHHHHHHCCCCCHH
FKGVLAEHGVDWKFAP
HHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8955387; 3045764; 9278503 [H]