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The map label for this gene is xerC [H]

Identifier: 229916013

GI number: 229916013

Start: 248060

End: 249073

Strand: Direct

Name: xerC [H]

Synonym: EAT1b_0281

Alternate gene names: 229916013

Gene position: 248060-249073 (Clockwise)

Preceding gene: 229916012

Following gene: 229916017

Centisome position: 8.27

GC content: 50.0

Gene sequence:

>1014_bases
ATGAGTATTTTCCGTCAACTTGGACAGCGGCAGACACCGACGACGACGAAACGCTTCGAGTTGAACGGGTTGCACCGACT
ACCCGCATTCATCCAACAGTTTTTTCATCATTTAGCAGCGAAGCATTATTCCAAACAGACGGCCCAGCGCTATGTGTATG
ACGTTTTAGATTTCTTTCGTTGGGTCGAGCTTGTGAGTGGAACGGAGTTAGAACCTGAAACGATTGACTTGCCATCATTC
ACAGAGATTGACCATGCCGGAGCAGAAGCGTATGCGACTTATCTTGCCCTCGAGCTCGAAAACGCTCCGAGCGTCATCAA
TCGGAAGCTTTCAACGTTACAGTCACTCTTCAATTACTTAATCGAGACCAATCAGGCAACGGTGAATCCTTTTCAAACCG
TAGAACGTCCGAAACGCGGCAAACGGAACCCCGTCTATTTGACGGAATCGGAGTGGCTCGATTTCTCGACGCTCGTACGG
TCCAATGTCGGCATGACGAATCGCGAGGCAAGTTGGTACGAAATGAATCGCGCGCGAGACTTTTTGATCATACAGTTACT
CGGACTGACAGGAATGCGCGTATCCGAGCTCGTCGGACTCAATTGGTCCGACATCAACCTTGAGACCGGAACGATTCGAG
TCATCGGTAAAGGCGACAAGGAACGCTTGATCCCCATCGCAGGGCCACTTCTTCCGCTCCTCTCTGAGTATCGCCACACG
TCGAGCGAAGGTGCGGTGTTCCAAAATGAGAAGGGACAACGAATCGCTGTACGGACGGTTCAGCATATGTTGAAAGGCCA
TATTGACCGCTTAAAGCCTTACCTGCCGTTTTTGAGCCATAAACAGGTAACGCCACATAAACTCCGTCACACGTTCGCTT
CACGTCTCGCCATGGGTGGGGTCGATGTGCTCACGATACAACAGCTTCTCGGGCATGAATCTGTGGCAACGACACAAGTC
TATGCCCATATCGGAGATGAACGAAAAAAACACGCAATATCAGGTTTACAATAA

Upstream 100 bases:

>100_bases
TACGGTCGAAGAGATCGTCAAAGAAGCGGACAACTTCCTTCGTGAAGGGAAGCGTAGCGGAAAGAATCAAGTGAGAACTA
CATGAAGAAAGGGGCATTCT

Downstream 100 bases:

>100_bases
TATGTTATGTAAACTATATATCCAAATATAACCACCACCTATATAATGGGTGGTGGTTATATTTATGTGTTGGACATTGA
CAAAATCAAAATGGCATCAT

Product: integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 336

Protein sequence:

>337_residues
MSIFRQLGQRQTPTTTKRFELNGLHRLPAFIQQFFHHLAAKHYSKQTAQRYVYDVLDFFRWVELVSGTELEPETIDLPSF
TEIDHAGAEAYATYLALELENAPSVINRKLSTLQSLFNYLIETNQATVNPFQTVERPKRGKRNPVYLTESEWLDFSTLVR
SNVGMTNREASWYEMNRARDFLIIQLLGLTGMRVSELVGLNWSDINLETGTIRVIGKGDKERLIPIAGPLLPLLSEYRHT
SSEGAVFQNEKGQRIAVRTVQHMLKGHIDRLKPYLPFLSHKQVTPHKLRHTFASRLAMGGVDVLTIQQLLGHESVATTQV
YAHIGDERKKHAISGLQ

Sequences:

>Translated_337_residues
MSIFRQLGQRQTPTTTKRFELNGLHRLPAFIQQFFHHLAAKHYSKQTAQRYVYDVLDFFRWVELVSGTELEPETIDLPSF
TEIDHAGAEAYATYLALELENAPSVINRKLSTLQSLFNYLIETNQATVNPFQTVERPKRGKRNPVYLTESEWLDFSTLVR
SNVGMTNREASWYEMNRARDFLIIQLLGLTGMRVSELVGLNWSDINLETGTIRVIGKGDKERLIPIAGPLLPLLSEYRHT
SSEGAVFQNEKGQRIAVRTVQHMLKGHIDRLKPYLPFLSHKQVTPHKLRHTFASRLAMGGVDVLTIQQLLGHESVATTQV
YAHIGDERKKHAISGLQ
>Mature_336_residues
SIFRQLGQRQTPTTTKRFELNGLHRLPAFIQQFFHHLAAKHYSKQTAQRYVYDVLDFFRWVELVSGTELEPETIDLPSFT
EIDHAGAEAYATYLALELENAPSVINRKLSTLQSLFNYLIETNQATVNPFQTVERPKRGKRNPVYLTESEWLDFSTLVRS
NVGMTNREASWYEMNRARDFLIIQLLGLTGMRVSELVGLNWSDINLETGTIRVIGKGDKERLIPIAGPLLPLLSEYRHTS
SEGAVFQNEKGQRIAVRTVQHMLKGHIDRLKPYLPFLSHKQVTPHKLRHTFASRLAMGGVDVLTIQQLLGHESVATTQVY
AHIGDERKKHAISGLQ

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=231, Percent_Identity=33.3333333333333, Blast_Score=114, Evalue=6e-27,
Organism=Escherichia coli, GI1790244, Length=221, Percent_Identity=31.2217194570136, Blast_Score=105, Evalue=4e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 38477; Mature: 38345

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIFRQLGQRQTPTTTKRFELNGLHRLPAFIQQFFHHLAAKHYSKQTAQRYVYDVLDFFR
CCHHHHHCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WVELVSGTELEPETIDLPSFTEIDHAGAEAYATYLALELENAPSVINRKLSTLQSLFNYL
HHHHHCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHH
IETNQATVNPFQTVERPKRGKRNPVYLTESEWLDFSTLVRSNVGMTNREASWYEMNRARD
HHCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHH
FLIIQLLGLTGMRVSELVGLNWSDINLETGTIRVIGKGDKERLIPIAGPLLPLLSEYRHT
HHHHHHHCCCCCHHHHHHCCCCCCEEECCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCC
SSEGAVFQNEKGQRIAVRTVQHMLKGHIDRLKPYLPFLSHKQVTPHKLRHTFASRLAMGG
CCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
VDVLTIQQLLGHESVATTQVYAHIGDERKKHAISGLQ
CHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHCCCC
>Mature Secondary Structure 
SIFRQLGQRQTPTTTKRFELNGLHRLPAFIQQFFHHLAAKHYSKQTAQRYVYDVLDFFR
CHHHHHCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WVELVSGTELEPETIDLPSFTEIDHAGAEAYATYLALELENAPSVINRKLSTLQSLFNYL
HHHHHCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHH
IETNQATVNPFQTVERPKRGKRNPVYLTESEWLDFSTLVRSNVGMTNREASWYEMNRARD
HHCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHH
FLIIQLLGLTGMRVSELVGLNWSDINLETGTIRVIGKGDKERLIPIAGPLLPLLSEYRHT
HHHHHHHCCCCCHHHHHHCCCCCCEEECCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCC
SSEGAVFQNEKGQRIAVRTVQHMLKGHIDRLKPYLPFLSHKQVTPHKLRHTFASRLAMGG
CCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
VDVLTIQQLLGHESVATTQVYAHIGDERKKHAISGLQ
CHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]