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The map label for this gene is ydeC [H]

Identifier: 229915994

GI number: 229915994

Start: 228730

End: 229524

Strand: Reverse

Name: ydeC [H]

Synonym: EAT1b_0262

Alternate gene names: 229915994

Gene position: 229524-228730 (Counterclockwise)

Preceding gene: 229915995

Following gene: 229915992

Centisome position: 7.65

GC content: 46.42

Gene sequence:

>795_bases
TTGAAGAGTATCGAGATGATTCGTCACGGATCATTGACATTAAAGGTGACTGATCACTTCACTGTTCTTTTTTGCAAGTC
TGGGACGTCCGTGATTCGAGTGAACGGAGAAAGCATCACCCTTCATCCAAGAGAGGCCGTTCTCTTGGCACGAGGACAAA
GTGTCATGTTTGAGAAAATCGAGGAAGCGTCACCGATGAGGTTACTCGAGTTTGATCCGACTGCTTTGTTCCATCCCGAG
TTGGCGAAGCGATATGTGACGCCATATCTAAATACTGAAAAGTCCATACATATGATAAAACCGGAACGAGGTCATCAATC
TATTATTCAGACGATTGAACGGGCCGTTCAACATTTATCTGCGGACGGTCCGCTCGCATTGATGGATGCCACACTGCAGT
GTACGGTCATCTGGCGCTATTGGATTCAGCAAGAGGGTGAAGTGATGAAGAATGAGAACAAACGGGTGAGCCTTCGTCTG
ATGCTCGCTTACATCGATTCTCATCTAGAAGATAAGCCTACGTTAGCTCGAATCGCGACTGCAGGTAATGTAAGTCGCAG
TGAATGTTGTCGGTTGTTTACAACGTTCGGGAACACTTCCCCACTTGCTTATGTCCAAGTTAAAAGAATGGAACGGGCCG
CAACTCTATTAATGGATTCGATTGAATCGGTTGCTGACATCGCCAATCGCCTGAGCTACTCAAGTGTCAGTCACTTCGTA
CAGGCATTCAAAGCACATCATTCAATCACCCCGCTCGCCTATCGAAAACAATACCAAAGGAAAAGAGCCGAGTAA

Upstream 100 bases:

>100_bases
ATGTCAGATTCGTCCCAGTTCATGCTCAATTCAAAGTGTTTCTCCGTGAACAATCGAAATGAAATGTCGGGAAATTTCCT
AAACGAGGAGGATGGCTCTT

Downstream 100 bases:

>100_bases
TTTCGGCTCTTTTCCTTTATCTTGCGGTCCACCCACCATCTGCCTTCAAAACATCACCATTCACGAAGCTCGAATCATCC
GATGCTAAAAAGAGGGCGAC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MKSIEMIRHGSLTLKVTDHFTVLFCKSGTSVIRVNGESITLHPREAVLLARGQSVMFEKIEEASPMRLLEFDPTALFHPE
LAKRYVTPYLNTEKSIHMIKPERGHQSIIQTIERAVQHLSADGPLALMDATLQCTVIWRYWIQQEGEVMKNENKRVSLRL
MLAYIDSHLEDKPTLARIATAGNVSRSECCRLFTTFGNTSPLAYVQVKRMERAATLLMDSIESVADIANRLSYSSVSHFV
QAFKAHHSITPLAYRKQYQRKRAE

Sequences:

>Translated_264_residues
MKSIEMIRHGSLTLKVTDHFTVLFCKSGTSVIRVNGESITLHPREAVLLARGQSVMFEKIEEASPMRLLEFDPTALFHPE
LAKRYVTPYLNTEKSIHMIKPERGHQSIIQTIERAVQHLSADGPLALMDATLQCTVIWRYWIQQEGEVMKNENKRVSLRL
MLAYIDSHLEDKPTLARIATAGNVSRSECCRLFTTFGNTSPLAYVQVKRMERAATLLMDSIESVADIANRLSYSSVSHFV
QAFKAHHSITPLAYRKQYQRKRAE
>Mature_264_residues
MKSIEMIRHGSLTLKVTDHFTVLFCKSGTSVIRVNGESITLHPREAVLLARGQSVMFEKIEEASPMRLLEFDPTALFHPE
LAKRYVTPYLNTEKSIHMIKPERGHQSIIQTIERAVQHLSADGPLALMDATLQCTVIWRYWIQQEGEVMKNENKRVSLRL
MLAYIDSHLEDKPTLARIATAGNVSRSECCRLFTTFGNTSPLAYVQVKRMERAATLLMDSIESVADIANRLSYSSVSHFV
QAFKAHHSITPLAYRKQYQRKRAE

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 30089; Mature: 30089

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSIEMIRHGSLTLKVTDHFTVLFCKSGTSVIRVNGESITLHPREAVLLARGQSVMFEKI
CCCHHHEECCCEEEEEECCEEEEEEECCCEEEEECCCEEEECCHHEEEEECCCHHHHHHH
EEASPMRLLEFDPTALFHPELAKRYVTPYLNTEKSIHMIKPERGHQSIIQTIERAVQHLS
HCCCCCEEEEECCCCEECHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHCC
ADGPLALMDATLQCTVIWRYWIQQEGEVMKNENKRVSLRLMLAYIDSHLEDKPTLARIAT
CCCCEEEECCHHHEEHHHHHHHHCCCHHHHCCCCEEEHHHHHHHHHHHCCCCCHHHHHHH
AGNVSRSECCRLFTTFGNTSPLAYVQVKRMERAATLLMDSIESVADIANRLSYSSVSHFV
CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QAFKAHHSITPLAYRKQYQRKRAE
HHHHHHCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MKSIEMIRHGSLTLKVTDHFTVLFCKSGTSVIRVNGESITLHPREAVLLARGQSVMFEKI
CCCHHHEECCCEEEEEECCEEEEEEECCCEEEEECCCEEEECCHHEEEEECCCHHHHHHH
EEASPMRLLEFDPTALFHPELAKRYVTPYLNTEKSIHMIKPERGHQSIIQTIERAVQHLS
HCCCCCEEEEECCCCEECHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHCC
ADGPLALMDATLQCTVIWRYWIQQEGEVMKNENKRVSLRLMLAYIDSHLEDKPTLARIAT
CCCCEEEECCHHHEEHHHHHHHHCCCHHHHCCCCEEEHHHHHHHHHHHCCCCCHHHHHHH
AGNVSRSECCRLFTTFGNTSPLAYVQVKRMERAATLLMDSIESVADIANRLSYSSVSHFV
CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QAFKAHHSITPLAYRKQYQRKRAE
HHHHHHCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]