| Definition | Exiguobacterium sp. AT1b, complete genome. |
|---|---|
| Accession | NC_012673 |
| Length | 2,999,895 |
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The map label for this gene is yeeN [C]
Identifier: 229915886
GI number: 229915886
Start: 129254
End: 129967
Strand: Reverse
Name: yeeN [C]
Synonym: EAT1b_0153
Alternate gene names: 229915886
Gene position: 129967-129254 (Counterclockwise)
Preceding gene: 229915887
Following gene: 229915885
Centisome position: 4.33
GC content: 50.0
Gene sequence:
>714_bases ATGGGTCGTAAATGGAACAACATTAAAGAGAAGAAGGCGTCAAAAGATGCGAACACGAGTCGCGTCTATGCGAAGTTTGG TCGCGAGATTTATGTGGCCGCCCGTCAAGGGGAACCTGATCCTGAGTTGAACCAGTCATTAAAATTCGTGGTGGAGCGTG CGAAGACGTATAACGTGCCCCGGGCAATCATCGATCGTGCCATCGACAAAGCCAAAGGTGGCGATGAGGAAAACTTCGAT GAGCTTCGATATGAAGGGTTTGGTCCGAATGGTTCGATGGTCATCGTCGATACATTGACGAATAACGTCAACCGTACGGC TTCAGAAGTCCGTGCCGCTTTCGGTAAAAACGGAGGCAACATGGGAGTCAGTGGTTCGGTCGCATATATGTTCGATGCAA CTGCCGTCATCGGTGTCAATGAGATGTCGGCAGATGACGTCCTCGAACTGATGATGGAGCATGACCTTGATGTGCGTGAT GTTATCGAGGAAGACGAGACGGTCATCGTCTATGCAGAGCCAGAAGCGTTCCACGCCGTTCAGACTGCATTCAAGGCTGC CGGAGTAGAAGAGTTTGCCGTTGCGGAATTGACGATGCTCCCGCAGAACGAAGTGTCACTCGATGACGCTTCGCAAGAAC AGTTTGAAAAATTAATCGATGTGCTCGAAGACTTGGAAGATGTGCGCCAAGTGTATCATAACGTCGAGATGTAA
Upstream 100 bases:
>100_bases TGGACAAAGGTGACGAGTAAAACTTTTCTCGTCAATTCCCGCAACTTCTTATATAATCTGTAATGAATCTACGTACAAAT GGAAAGAGAGATGACATGTA
Downstream 100 bases:
>100_bases CACGTAAGCGATAACTTTCACGAGTTATCGCTTTTTTCATATTCGATTTGACAAGGGTCACATCATATGTTAAATTTCAA AAAGTCTTTATCATATTAAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 237; Mature: 236
Protein sequence:
>237_residues MGRKWNNIKEKKASKDANTSRVYAKFGREIYVAARQGEPDPELNQSLKFVVERAKTYNVPRAIIDRAIDKAKGGDEENFD ELRYEGFGPNGSMVIVDTLTNNVNRTASEVRAAFGKNGGNMGVSGSVAYMFDATAVIGVNEMSADDVLELMMEHDLDVRD VIEEDETVIVYAEPEAFHAVQTAFKAAGVEEFAVAELTMLPQNEVSLDDASQEQFEKLIDVLEDLEDVRQVYHNVEM
Sequences:
>Translated_237_residues MGRKWNNIKEKKASKDANTSRVYAKFGREIYVAARQGEPDPELNQSLKFVVERAKTYNVPRAIIDRAIDKAKGGDEENFD ELRYEGFGPNGSMVIVDTLTNNVNRTASEVRAAFGKNGGNMGVSGSVAYMFDATAVIGVNEMSADDVLELMMEHDLDVRD VIEEDETVIVYAEPEAFHAVQTAFKAAGVEEFAVAELTMLPQNEVSLDDASQEQFEKLIDVLEDLEDVRQVYHNVEM >Mature_236_residues GRKWNNIKEKKASKDANTSRVYAKFGREIYVAARQGEPDPELNQSLKFVVERAKTYNVPRAIIDRAIDKAKGGDEENFDE LRYEGFGPNGSMVIVDTLTNNVNRTASEVRAAFGKNGGNMGVSGSVAYMFDATAVIGVNEMSADDVLELMMEHDLDVRDV IEEDETVIVYAEPEAFHAVQTAFKAAGVEEFAVAELTMLPQNEVSLDDASQEQFEKLIDVLEDLEDVRQVYHNVEM
Specific function: Unknown
COG id: COG0217
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the TACO1 family
Homologues:
Organism=Homo sapiens, GI27545315, Length=243, Percent_Identity=29.2181069958848, Blast_Score=113, Evalue=1e-25, Organism=Escherichia coli, GI1788294, Length=235, Percent_Identity=57.8723404255319, Blast_Score=286, Evalue=6e-79, Organism=Escherichia coli, GI1788171, Length=236, Percent_Identity=38.135593220339, Blast_Score=174, Evalue=5e-45, Organism=Caenorhabditis elegans, GI17556100, Length=241, Percent_Identity=25.7261410788382, Blast_Score=69, Evalue=2e-12, Organism=Saccharomyces cerevisiae, GI6321458, Length=262, Percent_Identity=29.3893129770992, Blast_Score=95, Evalue=1e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y153_EXISA (C4L1E1)
Other databases:
- EMBL: CP001615 - RefSeq: YP_002884532.1 - GeneID: 7870233 - GenomeReviews: CP001615_GR - KEGG: eat:EAT1b_0153 - OMA: VSHMFDH - ProtClustDB: PRK12378 - HAMAP: MF_00693 - InterPro: IPR002876 - InterPro: IPR017856 - Gene3D: G3DSA:1.10.10.200 - PANTHER: PTHR12532 - TIGRFAMs: TIGR01033
Pfam domain/function: PF01709 DUF28; SSF75625 DUF28
EC number: NA
Molecular weight: Translated: 26409; Mature: 26278
Theoretical pI: Translated: 4.22; Mature: 4.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGRKWNNIKEKKASKDANTSRVYAKFGREIYVAARQGEPDPELNQSLKFVVERAKTYNVP CCCCCCCHHHHHHCCCCCHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCC RAIIDRAIDKAKGGDEENFDELRYEGFGPNGSMVIVDTLTNNVNRTASEVRAAFGKNGGN HHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCC MGVSGSVAYMFDATAVIGVNEMSADDVLELMMEHDLDVRDVIEEDETVIVYAEPEAFHAV CCCCCCEEEEEECEEEEECCCCCHHHHHHHHHHCCCCHHHHHCCCCEEEEEECCHHHHHH QTAFKAAGVEEFAVAELTMLPQNEVSLDDASQEQFEKLIDVLEDLEDVRQVYHNVEM HHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure GRKWNNIKEKKASKDANTSRVYAKFGREIYVAARQGEPDPELNQSLKFVVERAKTYNVP CCCCCCHHHHHHCCCCCHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCC RAIIDRAIDKAKGGDEENFDELRYEGFGPNGSMVIVDTLTNNVNRTASEVRAAFGKNGGN HHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCC MGVSGSVAYMFDATAVIGVNEMSADDVLELMMEHDLDVRDVIEEDETVIVYAEPEAFHAV CCCCCCEEEEEECEEEEECCCCCHHHHHHHHHHCCCCHHHHHCCCCEEEEEECCHHHHHH QTAFKAAGVEEFAVAELTMLPQNEVSLDDASQEQFEKLIDVLEDLEDVRQVYHNVEM HHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA