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The map label for this gene is ssb

Identifier: 229587202

GI number: 229587202

Start: 1210571

End: 1211029

Strand: Direct

Name: ssb

Synonym: RAF_ORF1187

Alternate gene names: 229587202

Gene position: 1210571-1211029 (Clockwise)

Preceding gene: 229587199

Following gene: 229587203

Centisome position: 94.68

GC content: 33.99

Gene sequence:

>459_bases
ATGGCAGGTAGTTTAAATAAAGTAATATTAATAGGTAATGTAGGGCGTGATCCGGAAATGAGAACTACGGGCGAAGGAAA
AAAAATCATTAATCTTTCCTTAGCAACAACCGAAACTTGGAAAGATCGCATTACCAGCGAACGAAAAGAACGAACTGAAT
GGCATAGAGTAGTGATATTTAGTGAAGGGTTAGTATCTGTTGTAGAACGCTATGTCACAAAAGGTAGCAAATTATATATT
GAAGGTTCATTGCAAACCCGTAAGTGGAATGATAATTCAGGTCAAGAAAAATATACCACGGAAGTTGTGTTACAAAACTT
TAATTCACAATTAATATTATTAGATAGTAAAAACTCTAATAATCATAATCAAGATTCAGGGCATAGCGAATATAAACATC
CTGAAACTAAAAATCATTCCTTTGACCATAGCGACTTAGACGACGAAATACCGTTTTAA

Upstream 100 bases:

>100_bases
CACTACAAAATTTTTGAGATATTTTTTAAAAAACCTGTAGTATTATAGGCTCTTTTATTTTATTATTGCAATAGTAATAT
TTTAAAGTAGGTAGTAATCT

Downstream 100 bases:

>100_bases
TCAAAATTGTTATGAAAAATTTTATTTGGGCAATAATATTTTTAATACCAATATTTCTTTCAGGGTGTTCTACTACTCAT
GATGTAGCTAGAAGGGTAAA

Product: single-stranded DNA-binding protein

Products: NA

Alternate protein names: SSB; Helix-destabilizing protein

Number of amino acids: Translated: 152; Mature: 151

Protein sequence:

>152_residues
MAGSLNKVILIGNVGRDPEMRTTGEGKKIINLSLATTETWKDRITSERKERTEWHRVVIFSEGLVSVVERYVTKGSKLYI
EGSLQTRKWNDNSGQEKYTTEVVLQNFNSQLILLDSKNSNNHNQDSGHSEYKHPETKNHSFDHSDLDDEIPF

Sequences:

>Translated_152_residues
MAGSLNKVILIGNVGRDPEMRTTGEGKKIINLSLATTETWKDRITSERKERTEWHRVVIFSEGLVSVVERYVTKGSKLYI
EGSLQTRKWNDNSGQEKYTTEVVLQNFNSQLILLDSKNSNNHNQDSGHSEYKHPETKNHSFDHSDLDDEIPF
>Mature_151_residues
AGSLNKVILIGNVGRDPEMRTTGEGKKIINLSLATTETWKDRITSERKERTEWHRVVIFSEGLVSVVERYVTKGSKLYIE
GSLQTRKWNDNSGQEKYTTEVVLQNFNSQLILLDSKNSNNHNQDSGHSEYKHPETKNHSFDHSDLDDEIPF

Specific function: This protein is essential for replication of the chromosome. It is also involved in DNA recombination and repair

COG id: COG0629

COG function: function code L; Single-stranded DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain

Homologues:

Organism=Homo sapiens, GI4507231, Length=110, Percent_Identity=35.4545454545455, Blast_Score=70, Evalue=7e-13,
Organism=Escherichia coli, GI1790494, Length=118, Percent_Identity=50, Blast_Score=130, Evalue=3e-32,

Paralogues:

None

Copy number: 1622 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): SSB_RICCN (Q92G30)

Other databases:

- EMBL:   AE006914
- PIR:   G97861
- RefSeq:   NP_360932.1
- ProteinModelPortal:   Q92G30
- SMR:   Q92G30
- GeneID:   928445
- GenomeReviews:   AE006914_GR
- KEGG:   rco:RC1295
- NMPDR:   fig|272944.1.peg.1295
- OMA:   DESRTSQ
- ProtClustDB:   PRK06642
- BioCyc:   RCON272944:RC1295-MONOMER
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424
- InterPro:   IPR011344
- Gene3D:   G3DSA:2.40.50.140
- PANTHER:   PTHR10302
- TIGRFAMs:   TIGR00621

Pfam domain/function: PF00436 SSB; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 17436; Mature: 17304

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGSLNKVILIGNVGRDPEMRTTGEGKKIINLSLATTETWKDRITSERKERTEWHRVVIF
CCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEE
SEGLVSVVERYVTKGSKLYIEGSLQTRKWNDNSGQEKYTTEVVLQNFNSQLILLDSKNSN
CCCHHHHHHHHHCCCCEEEEECCCEEEECCCCCCCHHHHHHHHHHCCCCEEEEEECCCCC
NHNQDSGHSEYKHPETKNHSFDHSDLDDEIPF
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AGSLNKVILIGNVGRDPEMRTTGEGKKIINLSLATTETWKDRITSERKERTEWHRVVIF
CCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEE
SEGLVSVVERYVTKGSKLYIEGSLQTRKWNDNSGQEKYTTEVVLQNFNSQLILLDSKNSN
CCCHHHHHHHHHCCCCEEEEECCCEEEECCCCCCCHHHHHHHHHHCCCCEEEEEECCCCC
NHNQDSGHSEYKHPETKNHSFDHSDLDDEIPF
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11557893