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The map label for this gene is omp [H]

Identifier: 229587197

GI number: 229587197

Start: 1203480

End: 1203959

Strand: Direct

Name: omp [H]

Synonym: RAF_ORF1180

Alternate gene names: 229587197

Gene position: 1203480-1203959 (Clockwise)

Preceding gene: 229587190

Following gene: 229587198

Centisome position: 94.13

GC content: 43.12

Gene sequence:

>480_bases
ATGAAACTATTATCTAAAATTATGATTATAGCTCTTGCAACTTCTATGTTACAAGCCTGTAACGGTCCGGGCGGTATGAA
TAAACAAGGTACAGGAACACTTCTTGGCGGTGCTGGCGGCGCATTACTTGGTTCTCAATTCGGTAAGGGCAAAGGACAGC
TTGTTGGAGTAGGTGTAGGTGCATTACTTGGAGCAGTTCTTGGTGGACAAATCGGTGCAGGTATGGATGAACAGGATAGA
AGACTTGCAGAGCTTACCTCACAGAAAGCTTTAGAAACAGCTCCTAGTGGTAGTAACGTAGAATGGCGTAATCCGGATAA
CGGCAATTACGGTTACGTAACACCTAATAAAACTTATAGAAATAGCACTGGTCAATATTGCCGTGAATACACTCAAACAG
TTGTAATAGGCGGAAAACAACAAAAAGCATACGGTAATGCATGCCGCCAACCTGACGGACAATGGCAAGTTGTGAATTGA

Upstream 100 bases:

>100_bases
TTAAAAATAATATTTTAAAATACACAGAATCTAGTTTTAGCTTTACAAAATTCTAAAAACCATATACTTATTAATTATAT
ATTAATTTAGAGAGAATTAT

Downstream 100 bases:

>100_bases
TAGACAAAACGTCATTGCGAGGAAAATTACGAAGTAATTGCCGAAGTAATCTCAGGAATTTTATTATTTCATGAGATTGC
CACGCAGCTTATGGCTGCTC

Product: 17 kD surface antigen precursor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 159; Mature: 159

Protein sequence:

>159_residues
MKLLSKIMIIALATSMLQACNGPGGMNKQGTGTLLGGAGGALLGSQFGKGKGQLVGVGVGALLGAVLGGQIGAGMDEQDR
RLAELTSQKALETAPSGSNVEWRNPDNGNYGYVTPNKTYRNSTGQYCREYTQTVVIGGKQQKAYGNACRQPDGQWQVVN

Sequences:

>Translated_159_residues
MKLLSKIMIIALATSMLQACNGPGGMNKQGTGTLLGGAGGALLGSQFGKGKGQLVGVGVGALLGAVLGGQIGAGMDEQDR
RLAELTSQKALETAPSGSNVEWRNPDNGNYGYVTPNKTYRNSTGQYCREYTQTVVIGGKQQKAYGNACRQPDGQWQVVN
>Mature_159_residues
MKLLSKIMIIALATSMLQACNGPGGMNKQGTGTLLGGAGGALLGSQFGKGKGQLVGVGVGALLGAVLGGQIGAGMDEQDR
RLAELTSQKALETAPSGSNVEWRNPDNGNYGYVTPNKTYRNSTGQYCREYTQTVVIGGKQQKAYGNACRQPDGQWQVVN

Specific function: Unknown

COG id: COG4520

COG function: function code M; Surface antigen

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rickettsiale 17 kDa surface antigen family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008816
- InterPro:   IPR016364 [H]

Pfam domain/function: PF05433 Rick_17kDa_Anti [H]

EC number: NA

Molecular weight: Translated: 16553; Mature: 16553

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLLSKIMIIALATSMLQACNGPGGMNKQGTGTLLGGAGGALLGSQFGKGKGQLVGVGVG
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCHHHHHHCCCCCCCEEEECHH
ALLGAVLGGQIGAGMDEQDRRLAELTSQKALETAPSGSNVEWRNPDNGNYGYVTPNKTYR
HHHHHHHCCHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCEEEECCCCCCC
NSTGQYCREYTQTVVIGGKQQKAYGNACRQPDGQWQVVN
CCHHHHHHHHHHEEEECCCCCCHHHHHHCCCCCCEEECC
>Mature Secondary Structure
MKLLSKIMIIALATSMLQACNGPGGMNKQGTGTLLGGAGGALLGSQFGKGKGQLVGVGVG
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCHHHHHHCCCCCCCEEEECHH
ALLGAVLGGQIGAGMDEQDRRLAELTSQKALETAPSGSNVEWRNPDNGNYGYVTPNKTYR
HHHHHHHCCHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCEEEECCCCCCC
NSTGQYCREYTQTVVIGGKQQKAYGNACRQPDGQWQVVN
CCHHHHHHHHHHEEEECCCCCCHHHHHHCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2768201; 11557893 [H]