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The map label for this gene is recA

Identifier: 229587122

GI number: 229587122

Start: 1093360

End: 1094391

Strand: Direct

Name: recA

Synonym: RAF_ORF1077

Alternate gene names: 229587122

Gene position: 1093360-1094391 (Clockwise)

Preceding gene: 229587121

Following gene: 229587123

Centisome position: 85.52

GC content: 38.66

Gene sequence:

>1032_bases
ATGTCAAATACAGATAAGGAAAGAGCCATTGCCGCAGCACTCGCACAAATTGAAAAAAGCTACGGTAAAGGTTCGGTAAT
GAAACTAGGGCAGCGTCCGCATGTTGATATAGAGGCCGTATCAACCGGCTCACTTGGGCTAGATATAGCTCTTGGAATCG
GCGGTGTTCCCAAAGGTAGAATCATCGAAATTTTTGGTCCTGAAAGCTCAGGTAAAACCACTCTAACATTGCATTTAATT
GCAGAAGCTCAAAAAAAGGGTGGTACATGTGCTTTTATTGATGCCGAGCATGCATTAGACCCTGCTTATGCTAAAAAATT
AGGCGTAAATATTGATGAGCTTATTATTTCACAGCCCGATACAGGTGAACAAGCCCTAGAAATTGCCGATACATTAATTC
GCTCCAGCGGTATTGATATGATAATAATAGATAGTGTTGCGGCTTTAGTACCGAAATCAGAGATTGAGGGCGAAATGGGT
GATGCTCAAATGGCTTCTCAAGCAAGATTAATGAGCCAGGCTTTGCGTAAACTTACTGCATCAATTAATCGCACCAATTG
TATTGCTGTTTTCATCAATCAAATCAGAATGAAAATAGGTGTGATGTTCGGTAGTCCTGAAACCACGACAGGCGGTAATG
CCTTAAAATTCTATGCTTCTGTTAGGATCGATATAAGAAGAATCGGCTCCATTAAAGATAAAGAAGAAGTAATAGGCAGC
CAAACCAAAGTAAAAGTAGTCAAAAACAAAGTATCTCCTCCATTTAAAACTGCAGATTTTGATATAATGTACGGTTCAGG
TATTTCAAAAGAAGGCGAGATAATCGACCTTGGAGTTAAGCTTGATATTGTTGAGAAATCCGGCTCTTGGTTTTCCTACA
AGAACGTACGCATAGGTCAAGGACGTGAAAACGTCAAACAATATTTAAAAGAACATCCACAAATTTCCAACGAAATTGAG
AAAATAATACGTGAAAAATCGTCAAAAATTACTAATATAAATCTTGATCAAACGGAGGAAGAAAATGATTGA

Upstream 100 bases:

>100_bases
AAGTCAAGATTTAATCTTACAAGCACAATAACATAAATAAAATTTGATTTTTCTTTCTCAAGCTTATATTTTAATTGGTA
AGTTTATAATATGGAAATTT

Downstream 100 bases:

>100_bases
TTTAACAGGTAAAACTTCCTTAATTACGGGAGCTTCAGGAGGCATAGGCGGAGCTATAGCGAGGTTACTACACAAACTCG
GAAGCCATGTAATTATTAGC

Product: recombinase A

Products: NA

Alternate protein names: Recombinase A

Number of amino acids: Translated: 343; Mature: 342

Protein sequence:

>343_residues
MSNTDKERAIAAALAQIEKSYGKGSVMKLGQRPHVDIEAVSTGSLGLDIALGIGGVPKGRIIEIFGPESSGKTTLTLHLI
AEAQKKGGTCAFIDAEHALDPAYAKKLGVNIDELIISQPDTGEQALEIADTLIRSSGIDMIIIDSVAALVPKSEIEGEMG
DAQMASQARLMSQALRKLTASINRTNCIAVFINQIRMKIGVMFGSPETTTGGNALKFYASVRIDIRRIGSIKDKEEVIGS
QTKVKVVKNKVSPPFKTADFDIMYGSGISKEGEIIDLGVKLDIVEKSGSWFSYKNVRIGQGRENVKQYLKEHPQISNEIE
KIIREKSSKITNINLDQTEEEND

Sequences:

>Translated_343_residues
MSNTDKERAIAAALAQIEKSYGKGSVMKLGQRPHVDIEAVSTGSLGLDIALGIGGVPKGRIIEIFGPESSGKTTLTLHLI
AEAQKKGGTCAFIDAEHALDPAYAKKLGVNIDELIISQPDTGEQALEIADTLIRSSGIDMIIIDSVAALVPKSEIEGEMG
DAQMASQARLMSQALRKLTASINRTNCIAVFINQIRMKIGVMFGSPETTTGGNALKFYASVRIDIRRIGSIKDKEEVIGS
QTKVKVVKNKVSPPFKTADFDIMYGSGISKEGEIIDLGVKLDIVEKSGSWFSYKNVRIGQGRENVKQYLKEHPQISNEIE
KIIREKSSKITNINLDQTEEEND
>Mature_342_residues
SNTDKERAIAAALAQIEKSYGKGSVMKLGQRPHVDIEAVSTGSLGLDIALGIGGVPKGRIIEIFGPESSGKTTLTLHLIA
EAQKKGGTCAFIDAEHALDPAYAKKLGVNIDELIISQPDTGEQALEIADTLIRSSGIDMIIIDSVAALVPKSEIEGEMGD
AQMASQARLMSQALRKLTASINRTNCIAVFINQIRMKIGVMFGSPETTTGGNALKFYASVRIDIRRIGSIKDKEEVIGSQ
TKVKVVKNKVSPPFKTADFDIMYGSGISKEGEIIDLGVKLDIVEKSGSWFSYKNVRIGQGRENVKQYLKEHPQISNEIEK
IIREKSSKITNINLDQTEEEND

Specific function: Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with lexA causing its activation

COG id: COG0468

COG function: function code L; RecA/RadA recombinase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recA family

Homologues:

Organism=Escherichia coli, GI1789051, Length=323, Percent_Identity=64.7058823529412, Blast_Score=459, Evalue=1e-130,

Paralogues:

None

Copy number: 1548 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 800-1200 (L-broth) 40,000-60,000 (L-broth + Nalidixate) 4,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): RECA_RICAE (C3PLP0)

Other databases:

- EMBL:   CP001612
- RefSeq:   YP_002845623.1
- ProteinModelPortal:   C3PLP0
- SMR:   C3PLP0
- GeneID:   7815769
- GenomeReviews:   CP001612_GR
- KEGG:   raf:RAF_ORF1077
- OMA:   MAQAPDR
- ProtClustDB:   PRK09354
- GO:   GO:0005737
- HAMAP:   MF_00268
- InterPro:   IPR003593
- InterPro:   IPR013765
- InterPro:   IPR020584
- InterPro:   IPR020588
- InterPro:   IPR020587
- PANTHER:   PTHR22942:SF1
- PRINTS:   PR00142
- SMART:   SM00382
- TIGRFAMs:   TIGR02012

Pfam domain/function: PF00154 RecA

EC number: NA

Molecular weight: Translated: 37220; Mature: 37089

Theoretical pI: Translated: 6.55; Mature: 6.55

Prosite motif: PS00321 RECA_1; PS50162 RECA_2; PS50163 RECA_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNTDKERAIAAALAQIEKSYGKGSVMKLGQRPHVDIEAVSTGSLGLDIALGIGGVPKGR
CCCCHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCEEEEECCCCCCEEEEECCCCCCCCC
IIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKLGVNIDELIISQPD
EEEEECCCCCCCEEEEEEEEEEHHHCCCEEEEEEHHHCCCHHHHHHHCCCHHHHEECCCC
TGEQALEIADTLIRSSGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALRKLTA
CCHHHHHHHHHHHHHCCCCEEEECHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
SINRTNCIAVFINQIRMKIGVMFGSPETTTGGNALKFYASVRIDIRRIGSIKDKEEVIGS
HCCCCHHHHHHHHHHHHHEEEEECCCCCCCCCCEEEEEEEEEEEEEHHCCCCCHHHHHCC
QTKVKVVKNKVSPPFKTADFDIMYGSGISKEGEIIDLGVKLDIVEKSGSWFSYKNVRIGQ
CCEEEEEHHCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEEEECCCCEEEECCEEECC
GRENVKQYLKEHPQISNEIEKIIREKSSKITNINLDQTEEEND
CHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEECCCCCCCCCCC
>Mature Secondary Structure 
SNTDKERAIAAALAQIEKSYGKGSVMKLGQRPHVDIEAVSTGSLGLDIALGIGGVPKGR
CCCHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCEEEEECCCCCCEEEEECCCCCCCCC
IIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKLGVNIDELIISQPD
EEEEECCCCCCCEEEEEEEEEEHHHCCCEEEEEEHHHCCCHHHHHHHCCCHHHHEECCCC
TGEQALEIADTLIRSSGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALRKLTA
CCHHHHHHHHHHHHHCCCCEEEECHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
SINRTNCIAVFINQIRMKIGVMFGSPETTTGGNALKFYASVRIDIRRIGSIKDKEEVIGS
HCCCCHHHHHHHHHHHHHEEEEECCCCCCCCCCEEEEEEEEEEEEEHHCCCCCHHHHHCC
QTKVKVVKNKVSPPFKTADFDIMYGSGISKEGEIIDLGVKLDIVEKSGSWFSYKNVRIGQ
CCEEEEEHHCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEEEECCCCEEEECCEEECC
GRENVKQYLKEHPQISNEIEKIIREKSSKITNINLDQTEEEND
CHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA