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The map label for this gene is 229587107

Identifier: 229587107

GI number: 229587107

Start: 1073554

End: 1074672

Strand: Direct

Name: 229587107

Synonym: RAF_ORF1054

Alternate gene names: NA

Gene position: 1073554-1074672 (Clockwise)

Preceding gene: 229587105

Following gene: 229587109

Centisome position: 83.97

GC content: 31.64

Gene sequence:

>1119_bases
ATGGCTAGTATAAAACATAAACTACGAATCGTTCTATCATTTTTTTGCTTGATATATTTAACGTCCTGTCAAACTCCTAA
AGAAGAACCTATAAGTTTTCCTAAAAAAGAACAAACAGAAATTGAGATTGCAATTTTAATGCCAAATCAGGGTCCTGATA
GTATTGTCGGGAAACAATATAAAGATTTAATTAAAATGGGACTTAACGACGGAATCAAATCTTACATACATGTTACTTCT
TACGATGGTTCAGACGAAAAAAACGTTTTAGCTGCTATGGATAAAATAGTAGCACGTAAAACTAAGATTATTTTAGGTCC
TCTATATTCTAACTTTACCTCTCTAATAGCCGAAAAAGCAAAGGCAAATGATATTATTATAATAACTATGTCAAATAATC
CGGCTCTTGCAGAAGATAAATTATTTGTATTCGGTCATGCACCTTTAAAACAACTGATACGTATCATTAATTATTACGCA
AGTAACAACCATAAAGATTTTATGGCATTATTACCTAAAGGGAAGCATTCGCAAACTATTAGTCAAGTAATGCAAAATAT
ATTGATTCAGAACAATGCATCATTATCACGCACTGAATTTTATGAGGATAATCCTGAATCTATAGCAAAAGCCGCAAGAA
ATATTTCAGACAATACCGATATTATAAATGAACATAGCGACACAACAAAACCGGTTATTTATCTATCAGACGATCCAAAA
AATTTAAACCTACTTGCTGATAGTATTCGTAAATATAATTTAGATAAAAAGGCTATTTTAATCGGTGATCATCGTATTGA
TATCGATTACCCTGAAAATATCGATATTAGCTTTACCGGCTCTTTAAATTTACTCAATAGCAACGTTCCGGATAGGGCAA
AAGACTTAGGTATTAACCATATGGGCTTCATGCATCTTCTTTCTTATGATTTAGGACGTATGACTGCAAACTATATAGGC
AATGAATTTGCATCTGAAAGGTTTTTAAATAGAATGAACAGTAGACAACCTTATATAGGTTTATCCGGTAATATTTATTT
CATCGATGGAGTAGCTCAGAGACGATATGATATTATTAGGAAAGAGAATGGGATATATTCTACTGTTTCAGGAAATTAG

Upstream 100 bases:

>100_bases
GAAGCGTTATATCTTCAAAATTACCGATCGGTGTTGAAACAATATATAATGCCGGTTTGGAAAGATATCTAATCATAGTT
TTTTAATTTTAAGTAACATT

Downstream 100 bases:

>100_bases
GGCGTTGTTGTATCTTGGTCACTCAGTAACCTGACCATGTGTTGTACGAATGTTCAGGATGTCATTCCCGCGGAAGCGGG
AATCCAGTACTTTAAAGATT

Product: ABC-type transport systems periplasmic component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 372; Mature: 371

Protein sequence:

>372_residues
MASIKHKLRIVLSFFCLIYLTSCQTPKEEPISFPKKEQTEIEIAILMPNQGPDSIVGKQYKDLIKMGLNDGIKSYIHVTS
YDGSDEKNVLAAMDKIVARKTKIILGPLYSNFTSLIAEKAKANDIIIITMSNNPALAEDKLFVFGHAPLKQLIRIINYYA
SNNHKDFMALLPKGKHSQTISQVMQNILIQNNASLSRTEFYEDNPESIAKAARNISDNTDIINEHSDTTKPVIYLSDDPK
NLNLLADSIRKYNLDKKAILIGDHRIDIDYPENIDISFTGSLNLLNSNVPDRAKDLGINHMGFMHLLSYDLGRMTANYIG
NEFASERFLNRMNSRQPYIGLSGNIYFIDGVAQRRYDIIRKENGIYSTVSGN

Sequences:

>Translated_372_residues
MASIKHKLRIVLSFFCLIYLTSCQTPKEEPISFPKKEQTEIEIAILMPNQGPDSIVGKQYKDLIKMGLNDGIKSYIHVTS
YDGSDEKNVLAAMDKIVARKTKIILGPLYSNFTSLIAEKAKANDIIIITMSNNPALAEDKLFVFGHAPLKQLIRIINYYA
SNNHKDFMALLPKGKHSQTISQVMQNILIQNNASLSRTEFYEDNPESIAKAARNISDNTDIINEHSDTTKPVIYLSDDPK
NLNLLADSIRKYNLDKKAILIGDHRIDIDYPENIDISFTGSLNLLNSNVPDRAKDLGINHMGFMHLLSYDLGRMTANYIG
NEFASERFLNRMNSRQPYIGLSGNIYFIDGVAQRRYDIIRKENGIYSTVSGN
>Mature_371_residues
ASIKHKLRIVLSFFCLIYLTSCQTPKEEPISFPKKEQTEIEIAILMPNQGPDSIVGKQYKDLIKMGLNDGIKSYIHVTSY
DGSDEKNVLAAMDKIVARKTKIILGPLYSNFTSLIAEKAKANDIIIITMSNNPALAEDKLFVFGHAPLKQLIRIINYYAS
NNHKDFMALLPKGKHSQTISQVMQNILIQNNASLSRTEFYEDNPESIAKAARNISDNTDIINEHSDTTKPVIYLSDDPKN
LNLLADSIRKYNLDKKAILIGDHRIDIDYPENIDISFTGSLNLLNSNVPDRAKDLGINHMGFMHLLSYDLGRMTANYIGN
EFASERFLNRMNSRQPYIGLSGNIYFIDGVAQRRYDIIRKENGIYSTVSGN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007443 [H]

Pfam domain/function: PF04348 LppC [H]

EC number: NA

Molecular weight: Translated: 41975; Mature: 41843

Theoretical pI: Translated: 8.18; Mature: 8.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASIKHKLRIVLSFFCLIYLTSCQTPKEEPISFPKKEQTEIEIAILMPNQGPDSIVGKQY
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
KDLIKMGLNDGIKSYIHVTSYDGSDEKNVLAAMDKIVARKTKIILGPLYSNFTSLIAEKA
HHHHHHCCCCCCHHEEEEEECCCCCCHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHC
KANDIIIITMSNNPALAEDKLFVFGHAPLKQLIRIINYYASNNHKDFMALLPKGKHSQTI
CCCCEEEEEECCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHH
SQVMQNILIQNNASLSRTEFYEDNPESIAKAARNISDNTDIINEHSDTTKPVIYLSDDPK
HHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCC
NLNLLADSIRKYNLDKKAILIGDHRIDIDYPENIDISFTGSLNLLNSNVPDRAKDLGINH
CHHHHHHHHHHCCCCCCEEEEECEEEECCCCCCCCEEEECCEEEECCCCCCHHHHCCCCH
MGFMHLLSYDLGRMTANYIGNEFASERFLNRMNSRQPYIGLSGNIYFIDGVAQRRYDIIR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEECHHHHHHHHHH
KENGIYSTVSGN
CCCCEEEECCCC
>Mature Secondary Structure 
ASIKHKLRIVLSFFCLIYLTSCQTPKEEPISFPKKEQTEIEIAILMPNQGPDSIVGKQY
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
KDLIKMGLNDGIKSYIHVTSYDGSDEKNVLAAMDKIVARKTKIILGPLYSNFTSLIAEKA
HHHHHHCCCCCCHHEEEEEECCCCCCHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHC
KANDIIIITMSNNPALAEDKLFVFGHAPLKQLIRIINYYASNNHKDFMALLPKGKHSQTI
CCCCEEEEEECCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHH
SQVMQNILIQNNASLSRTEFYEDNPESIAKAARNISDNTDIINEHSDTTKPVIYLSDDPK
HHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCC
NLNLLADSIRKYNLDKKAILIGDHRIDIDYPENIDISFTGSLNLLNSNVPDRAKDLGINH
CHHHHHHHHHHCCCCCCEEEEECEEEECCCCCCCCEEEECCEEEECCCCCCHHHHCCCCH
MGFMHLLSYDLGRMTANYIGNEFASERFLNRMNSRQPYIGLSGNIYFIDGVAQRRYDIIR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEECHHHHHHHHHH
KENGIYSTVSGN
CCCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]