Definition Rickettsia africae ESF-5 chromosome, complete genome.
Accession NC_012633
Length 1,278,540

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The map label for this gene is ydfJ [C]

Identifier: 229586981

GI number: 229586981

Start: 927668

End: 927910

Strand: Direct

Name: ydfJ [C]

Synonym: RAF_ORF0881

Alternate gene names: 229586981

Gene position: 927668-927910 (Clockwise)

Preceding gene: 229586980

Following gene: 229587012

Centisome position: 72.56

GC content: 41.15

Gene sequence:

>243_bases
TTGGCTGATAATATAGGTCGGAAATCCACAGTCATTATTACCACTATTTTAATGTCATTTTCTTGCATCGTTATGGTTAA
TCTTCCTACTTATGCCCAAGTAGGTGCTAGTGCCGCCTGCATAGTAACAATATGCCGTATAGTGCAAGGTATGTCATCCA
TGGGAGCAAGAGTAGGAGCAGAATTATATTTAACGGAATCTGTGGGAGTTCCTAAACGCTTTCCTGCCGTAGAGCATTTG
TAG

Upstream 100 bases:

>100_bases
TTGATGAGCTTTTCTTTCCGCAATATGAACGTTAATCGACTTCTTGCAGTTTTTTCTTTTTGTTCTACTTTTATTTTTAG
ACCCTTAGGAGCTTTATTAT

Downstream 100 bases:

>100_bases
GGGTGTGTGCTTAGGATTAACTGTGGCCTTTGGCGTAGAAACCTTAGTTACATCCTATGACTTTAATTAGCGTATCGCAT
TTTGGGTAGGTACAGGAATT

Product: MFS-type sugar transporter

Products: NA

Alternate protein names: MFS Type Sugar Transporter; MFS-Type Transporter; MFS-Type Sugar Transporter; Facilitator Superfamily Permease

Number of amino acids: Translated: 80; Mature: 79

Protein sequence:

>80_residues
MADNIGRKSTVIITTILMSFSCIVMVNLPTYAQVGASAACIVTICRIVQGMSSMGARVGAELYLTESVGVPKRFPAVEHL

Sequences:

>Translated_80_residues
MADNIGRKSTVIITTILMSFSCIVMVNLPTYAQVGASAACIVTICRIVQGMSSMGARVGAELYLTESVGVPKRFPAVEHL
>Mature_79_residues
ADNIGRKSTVIITTILMSFSCIVMVNLPTYAQVGASAACIVTICRIVQGMSSMGARVGAELYLTESVGVPKRFPAVEHL

Specific function: Unknown

COG id: COG0477

COG function: function code GEPR; Permeases of the major facilitator superfamily

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 8490; Mature: 8359

Theoretical pI: Translated: 8.50; Mature: 8.50

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.8 %Cys     (Translated Protein)
6.2 %Met     (Translated Protein)
10.0 %Cys+Met (Translated Protein)
3.8 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
8.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADNIGRKSTVIITTILMSFSCIVMVNLPTYAQVGASAACIVTICRIVQGMSSMGARVGA
CCCCCCCCHHHHHHHHHHHHHEEEEEECCCHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
ELYLTESVGVPKRFPAVEHL
EEEEECCCCCCCCCCCCCCC
>Mature Secondary Structure 
ADNIGRKSTVIITTILMSFSCIVMVNLPTYAQVGASAACIVTICRIVQGMSSMGARVGA
CCCCCCCHHHHHHHHHHHHHEEEEEECCCHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
ELYLTESVGVPKRFPAVEHL
EEEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA