| Definition | Rickettsia africae ESF-5 chromosome, complete genome. |
|---|---|
| Accession | NC_012633 |
| Length | 1,278,540 |
Click here to switch to the map view.
The map label for this gene is ydfJ [C]
Identifier: 229586981
GI number: 229586981
Start: 927668
End: 927910
Strand: Direct
Name: ydfJ [C]
Synonym: RAF_ORF0881
Alternate gene names: 229586981
Gene position: 927668-927910 (Clockwise)
Preceding gene: 229586980
Following gene: 229587012
Centisome position: 72.56
GC content: 41.15
Gene sequence:
>243_bases TTGGCTGATAATATAGGTCGGAAATCCACAGTCATTATTACCACTATTTTAATGTCATTTTCTTGCATCGTTATGGTTAA TCTTCCTACTTATGCCCAAGTAGGTGCTAGTGCCGCCTGCATAGTAACAATATGCCGTATAGTGCAAGGTATGTCATCCA TGGGAGCAAGAGTAGGAGCAGAATTATATTTAACGGAATCTGTGGGAGTTCCTAAACGCTTTCCTGCCGTAGAGCATTTG TAG
Upstream 100 bases:
>100_bases TTGATGAGCTTTTCTTTCCGCAATATGAACGTTAATCGACTTCTTGCAGTTTTTTCTTTTTGTTCTACTTTTATTTTTAG ACCCTTAGGAGCTTTATTAT
Downstream 100 bases:
>100_bases GGGTGTGTGCTTAGGATTAACTGTGGCCTTTGGCGTAGAAACCTTAGTTACATCCTATGACTTTAATTAGCGTATCGCAT TTTGGGTAGGTACAGGAATT
Product: MFS-type sugar transporter
Products: NA
Alternate protein names: MFS Type Sugar Transporter; MFS-Type Transporter; MFS-Type Sugar Transporter; Facilitator Superfamily Permease
Number of amino acids: Translated: 80; Mature: 79
Protein sequence:
>80_residues MADNIGRKSTVIITTILMSFSCIVMVNLPTYAQVGASAACIVTICRIVQGMSSMGARVGAELYLTESVGVPKRFPAVEHL
Sequences:
>Translated_80_residues MADNIGRKSTVIITTILMSFSCIVMVNLPTYAQVGASAACIVTICRIVQGMSSMGARVGAELYLTESVGVPKRFPAVEHL >Mature_79_residues ADNIGRKSTVIITTILMSFSCIVMVNLPTYAQVGASAACIVTICRIVQGMSSMGARVGAELYLTESVGVPKRFPAVEHL
Specific function: Unknown
COG id: COG0477
COG function: function code GEPR; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 8490; Mature: 8359
Theoretical pI: Translated: 8.50; Mature: 8.50
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.8 %Cys (Translated Protein) 6.2 %Met (Translated Protein) 10.0 %Cys+Met (Translated Protein) 3.8 %Cys (Mature Protein) 5.1 %Met (Mature Protein) 8.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADNIGRKSTVIITTILMSFSCIVMVNLPTYAQVGASAACIVTICRIVQGMSSMGARVGA CCCCCCCCHHHHHHHHHHHHHEEEEEECCCHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC ELYLTESVGVPKRFPAVEHL EEEEECCCCCCCCCCCCCCC >Mature Secondary Structure ADNIGRKSTVIITTILMSFSCIVMVNLPTYAQVGASAACIVTICRIVQGMSSMGARVGA CCCCCCCHHHHHHHHHHHHHEEEEEECCCHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC ELYLTESVGVPKRFPAVEHL EEEEECCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA