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The map label for this gene is rnpA

Identifier: 229586954

GI number: 229586954

Start: 885294

End: 885650

Strand: Direct

Name: rnpA

Synonym: RAF_ORF0849

Alternate gene names: 229586954

Gene position: 885294-885650 (Clockwise)

Preceding gene: 229586953

Following gene: 229586961

Centisome position: 69.24

GC content: 27.45

Gene sequence:

>357_bases
TTGTCTATTACCTCTTTAAAAAATCAAAAAGAATTTGAGCTTATAAATAAGCTTGGAAAGAAGCTCCATGAGAGATATTT
TATTTTGGTAATCGCCACAAAACTTCCAAAAATCTTCCTTGAATCAAAATATAACACCTTTTTAGGAATCAAAGTTAGCA
GAAAGCTAAATAAAAAAGCTGTAGTTCGTAACAAAATTAAAAGGCGTATACGACATCTAATTAGAATTATTGTTAGTGAT
TCTAGCTTTAAGGCTATAAAATTTGCAATGATTATTATTCCGAGAAAAGGATTTGAAGAGATAAACTTCTCACACTTGAA
TTATGAATTAAGTAAAGTAATTCTAAGAAATATTTAG

Upstream 100 bases:

>100_bases
AGATCTAGAATGGCTACTCCAACCGGAAGAGCAATCTTAAGAAAACGTCGTGCTAAAGGTAGACATAAATTATCTGCTTA
AAATAATCTGATTTATCAAA

Downstream 100 bases:

>100_bases
ATTTCAATAGACCTCTTCGGAAACTCGCTTATAGAGAGGAATTTGAAGGAGACACGGAACACAGAACCGCAGCATACAAA
AGAGTACGTGAGGATTCAAG

Product: ribonuclease P

Products: NA

Alternate protein names: RNase P protein; RNaseP protein; Protein C5

Number of amino acids: Translated: 118; Mature: 117

Protein sequence:

>118_residues
MSITSLKNQKEFELINKLGKKLHERYFILVIATKLPKIFLESKYNTFLGIKVSRKLNKKAVVRNKIKRRIRHLIRIIVSD
SSFKAIKFAMIIIPRKGFEEINFSHLNYELSKVILRNI

Sequences:

>Translated_118_residues
MSITSLKNQKEFELINKLGKKLHERYFILVIATKLPKIFLESKYNTFLGIKVSRKLNKKAVVRNKIKRRIRHLIRIIVSD
SSFKAIKFAMIIIPRKGFEEINFSHLNYELSKVILRNI
>Mature_117_residues
SITSLKNQKEFELINKLGKKLHERYFILVIATKLPKIFLESKYNTFLGIKVSRKLNKKAVVRNKIKRRIRHLIRIIVSDS
SFKAIKFAMIIIPRKGFEEINFSHLNYELSKVILRNI

Specific function: RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-lead

COG id: COG0594

COG function: function code J; RNase P protein component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rnpA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNPA_RICAE (C3PP52)

Other databases:

- EMBL:   CP001612
- RefSeq:   YP_002845455.1
- ProteinModelPortal:   C3PP52
- SMR:   C3PP52
- GeneID:   7815651
- GenomeReviews:   CP001612_GR
- KEGG:   raf:RAF_ORF0849
- OMA:   FHERYFI
- ProtClustDB:   PRK01492
- HAMAP:   MF_00227
- InterPro:   IPR020568
- InterPro:   IPR014721
- InterPro:   IPR000100
- InterPro:   IPR020539
- Gene3D:   G3DSA:3.30.230.10

Pfam domain/function: PF00825 Ribonuclease_P; SSF54211 Ribosomal_S5_D2-typ_fold

EC number: =3.1.26.5

Molecular weight: Translated: 13971; Mature: 13840

Theoretical pI: Translated: 11.41; Mature: 11.41

Prosite motif: PS00648 RIBONUCLEASE_P

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSITSLKNQKEFELINKLGKKLHERYFILVIATKLPKIFLESKYNTFLGIKVSRKLNKKA
CCCCCCCCCHHHHHHHHHHHHHHHHEEEEEEECHHHHHHHHCCCCEEEEEEEHHHCCHHH
VVRNKIKRRIRHLIRIIVSDSSFKAIKFAMIIIPRKGFEEINFSHLNYELSKVILRNI
HHHHHHHHHHHHHHHHHHCCCCCHHEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SITSLKNQKEFELINKLGKKLHERYFILVIATKLPKIFLESKYNTFLGIKVSRKLNKKA
CCCCCCCCHHHHHHHHHHHHHHHHEEEEEEECHHHHHHHHCCCCEEEEEEEHHHCCHHH
VVRNKIKRRIRHLIRIIVSDSSFKAIKFAMIIIPRKGFEEINFSHLNYELSKVILRNI
HHHHHHHHHHHHHHHHHHCCCCCHHEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA