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The map label for this gene is himD [C]

Identifier: 229586789

GI number: 229586789

Start: 682898

End: 683140

Strand: Direct

Name: himD [C]

Synonym: RAF_ORF0647

Alternate gene names: 229586789

Gene position: 682898-683140 (Clockwise)

Preceding gene: 229586788

Following gene: 229586790

Centisome position: 53.41

GC content: 24.69

Gene sequence:

>243_bases
ATGATTACTAAGAATTATTTAATAGATAAAATACATGATAAGCTGAATTATCTTTCTAAAGAAGATGTTAAAGATTCAGT
AGATTTAATTTTAGATTATTTAAACGAATCTCTTAAAAAACAAAAGCGTATCGAAATCAGAAATTTCGGTAATTTCTCTA
TCCGCAAACGCAAATTTCCTGAAAGCGAAAAATTCTATAATACGGTTTATTACAGAATGCCTAAAAATTTATTTAAGGAA
TAA

Upstream 100 bases:

>100_bases
CAAAACCAAAATTAATGGACATAATACTTGAAGATTTTGATAGTATAGCACCTAGTTTTTTTAAAAATAGTTTTAACGGA
ATCAAAGCGATTTTTTAATA

Downstream 100 bases:

>100_bases
ATTTCCATGGCTCTTCATACTGAAGATTTAGAACTCTTCAAAAAAATATTATCGATAGATGGGAAGCTGATTATTCAAGC
ACTTAATATAGACTCTTTTA

Product: Integration host factor beta-subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 80; Mature: 80

Protein sequence:

>80_residues
MITKNYLIDKIHDKLNYLSKEDVKDSVDLILDYLNESLKKQKRIEIRNFGNFSIRKRKFPESEKFYNTVYYRMPKNLFKE

Sequences:

>Translated_80_residues
MITKNYLIDKIHDKLNYLSKEDVKDSVDLILDYLNESLKKQKRIEIRNFGNFSIRKRKFPESEKFYNTVYYRMPKNLFKE
>Mature_80_residues
MITKNYLIDKIHDKLNYLSKEDVKDSVDLILDYLNESLKKQKRIEIRNFGNFSIRKRKFPESEKFYNTVYYRMPKNLFKE

Specific function: Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR010992 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 9856; Mature: 9856

Theoretical pI: Translated: 10.08; Mature: 10.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITKNYLIDKIHDKLNYLSKEDVKDSVDLILDYLNESLKKQKRIEIRNFGNFSIRKRKFP
CCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
ESEKFYNTVYYRMPKNLFKE
CHHHHHHHHHHHCCHHHHCC
>Mature Secondary Structure
MITKNYLIDKIHDKLNYLSKEDVKDSVDLILDYLNESLKKQKRIEIRNFGNFSIRKRKFP
CCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
ESEKFYNTVYYRMPKNLFKE
CHHHHHHHHHHHCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11557893 [H]