Click here to switch to the map view.

The map label for this gene is rbn [H]

Identifier: 229586760

GI number: 229586760

Start: 651835

End: 652662

Strand: Direct

Name: rbn [H]

Synonym: RAF_ORF0614

Alternate gene names: 229586760

Gene position: 651835-652662 (Clockwise)

Preceding gene: 229586758

Following gene: 229586762

Centisome position: 50.98

GC content: 26.69

Gene sequence:

>828_bases
ATGAGAAAAATTTTTAATTGTCTTTACGTAGCCTTATTTAGAACAATAGAAGATGATGGCATTGAACATTCGGGATATAT
GTCATTCATGATACTTTTATCTATTTTCCCTTTCCTAGTATTCTTATTAGCTTTAACAAGCTTTTTAGGAGCTTCAGAAC
TTGGTCAAAATTTTATACAAATTTTTCTAGAGAGTCTTCCGGAACAAGCAACGGAATCAATAGAAAAAAGAATACGCGAA
TTACTAAGTGCTCCTCCTCAAAGTTTAATGAATCTTGCCATAGTAGGCAGTATTTGGACTGCTTCTTCTTTTGTAGAATG
TTTAAGGACTATTTTAAATCGTGTATATCAAATAAAATCCCCACCCCCTTATATAAGAAGAAGATTACTTAGTATTATAC
AGTTTCTTATAATTAGTGCCTTGATTACCTTTACTATGTTTCTTTTAGTGGTGATTCCAATATTATTTACAAAAATTCCG
ATAATATTAGAGACCATTGAAAAATATAAGATCATTTTAAATTTTATAAGATATTTTTTAATTTTAATTTTATTATTTTT
AGGTGCCTCATCTTTGTATTATATATTACCTAATGTAAAACTAAATTTTATTGATGTATTTCCAGGGGCTTTATTAACTG
TGATATTATGGATAATAAGCGGCTATTTACTTTCAACTTATATAGTCTACTATAATCAATTAAATCTAATGTATGGTTCA
CTTGGTAGTATAATAGTTACATTAATATTCTTCTATATTATAAATATGATATTTATCTATGGTGCGGAATTTAATTATCT
AATGAAAAATTATGAAAATATAGAGTGA

Upstream 100 bases:

>100_bases
AAGGATAAAGTATAGTTTCATTTTAATTATAAATTAATTATTTACAGCGAACTTATTTAAGATTAAATATAAAATTAATA
GTAACAACTTAGCTTTTATA

Downstream 100 bases:

>100_bases
AGTGCAGCTTAAAGCACTTCATCAGAAAAATAAAATACTTAATTGAAACAATTTCGGCAGTTTTATATTTAATATTTTAT
ATCAATCTTTATTTTAGTTG

Product: Putative ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 275

Protein sequence:

>275_residues
MRKIFNCLYVALFRTIEDDGIEHSGYMSFMILLSIFPFLVFLLALTSFLGASELGQNFIQIFLESLPEQATESIEKRIRE
LLSAPPQSLMNLAIVGSIWTASSFVECLRTILNRVYQIKSPPPYIRRRLLSIIQFLIISALITFTMFLLVVIPILFTKIP
IILETIEKYKIILNFIRYFLILILLFLGASSLYYILPNVKLNFIDVFPGALLTVILWIISGYLLSTYIVYYNQLNLMYGS
LGSIIVTLIFFYIINMIFIYGAEFNYLMKNYENIE

Sequences:

>Translated_275_residues
MRKIFNCLYVALFRTIEDDGIEHSGYMSFMILLSIFPFLVFLLALTSFLGASELGQNFIQIFLESLPEQATESIEKRIRE
LLSAPPQSLMNLAIVGSIWTASSFVECLRTILNRVYQIKSPPPYIRRRLLSIIQFLIISALITFTMFLLVVIPILFTKIP
IILETIEKYKIILNFIRYFLILILLFLGASSLYYILPNVKLNFIDVFPGALLTVILWIISGYLLSTYIVYYNQLNLMYGS
LGSIIVTLIFFYIINMIFIYGAEFNYLMKNYENIE
>Mature_275_residues
MRKIFNCLYVALFRTIEDDGIEHSGYMSFMILLSIFPFLVFLLALTSFLGASELGQNFIQIFLESLPEQATESIEKRIRE
LLSAPPQSLMNLAIVGSIWTASSFVECLRTILNRVYQIKSPPPYIRRRLLSIIQFLIISALITFTMFLLVVIPILFTKIP
IILETIEKYKIILNFIRYFLILILLFLGASSLYYILPNVKLNFIDVFPGALLTVILWIISGYLLSTYIVYYNQLNLMYGS
LGSIIVTLIFFYIINMIFIYGAEFNYLMKNYENIE

Specific function: Unknown

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: NA

Molecular weight: Translated: 31844; Mature: 31844

Theoretical pI: Translated: 8.12; Mature: 8.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKIFNCLYVALFRTIEDDGIEHSGYMSFMILLSIFPFLVFLLALTSFLGASELGQNFIQ
CHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
IFLESLPEQATESIEKRIRELLSAPPQSLMNLAIVGSIWTASSFVECLRTILNRVYQIKS
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PPPYIRRRLLSIIQFLIISALITFTMFLLVVIPILFTKIPIILETIEKYKIILNFIRYFL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILILLFLGASSLYYILPNVKLNFIDVFPGALLTVILWIISGYLLSTYIVYYNQLNLMYGS
HHHHHHHCCCHHEEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGSIIVTLIFFYIINMIFIYGAEFNYLMKNYENIE
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCC
>Mature Secondary Structure
MRKIFNCLYVALFRTIEDDGIEHSGYMSFMILLSIFPFLVFLLALTSFLGASELGQNFIQ
CHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
IFLESLPEQATESIEKRIRELLSAPPQSLMNLAIVGSIWTASSFVECLRTILNRVYQIKS
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PPPYIRRRLLSIIQFLIISALITFTMFLLVVIPILFTKIPIILETIEKYKIILNFIRYFL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILILLFLGASSLYYILPNVKLNFIDVFPGALLTVILWIISGYLLSTYIVYYNQLNLMYGS
HHHHHHHCCCHHEEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGSIIVTLIFFYIINMIFIYGAEFNYLMKNYENIE
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969503; 9384377 [H]