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The map label for this gene is yibD [C]

Identifier: 229586604

GI number: 229586604

Start: 457080

End: 458894

Strand: Direct

Name: yibD [C]

Synonym: RAF_ORF0430

Alternate gene names: 229586604

Gene position: 457080-458894 (Clockwise)

Preceding gene: 229586603

Following gene: 229586608

Centisome position: 35.75

GC content: 28.48

Gene sequence:

>1815_bases
ATGACAACTAGAAAAGATAAACCTCTAAATATTTATCATACTTTAGTTTCCATTATTATACCTGTCTATAATGGGGCTAA
TTATATGAAAGAAGCTATAAATAGTGCTTTAGCACAAACTTACAAAAATATTGAAATTATTGTTGTTAATGATGGTTCAA
AAGATAATGGAGAGACAGAACGTGTAGCATTATCATATGGTGATAAAATACGCTATTTTCATAAAGAAAACGGAGGTTGC
GGTTCGGCCTTAAATTACGGTATAAAAAACATGCAAGGGGAATATTTTTCGTGGCTTAGCCATGATGATATATATTATCC
TAATAAAATCGAGCATCAAGTTGACATATTAAATAAATTAGATAATAAAGATACTATCATTTACGGTGGTTATGAATTAA
TCGATGAAAAAGGCAACTCTCTACGTTATATTAAACCGGATAGTGTGCTACCTATAAATAAACTTAATATTTCTTTATTA
CCTTTATTACGAGGATTAATACATGGTTGTTCGTTATTGATGCCTGCTAAATATTTTCATGAAGTCGGTATATTTAATGA
GGCTTTACCGACAACGCAAGATTATGATTTATGGTTTAAAATTTTCCGTGTTGCCCCTATTCATTTTGACGAATCTATCC
TAATTAAATCTCGTTTTCATTCAGAGCAAGGTAGTAAAAAAATATCAAATCATAACGAAGAATGTAATGTATTATGGTCA
TCGTTTCTTCACGAGTTAACAGAAGAAGAAATGATCAAAATGGAAGGTTCTCCTTATTTATTTTTAACTCGTACAGCTAC
TTTTTTATCCAATAATACTCCGTATAAAAAAGCCTGTGATTTAGCAAATACTATGGCTAAACAAGTACTAAATGATACTA
AAGTTAGTGTTATTATACCGGTATATAATAGAATAAATTGGGCAATTGAAGCTATAGAAAGTGTACTTATTCAAACACAC
AAAAATTTTGAGATACTTATAATAGATGATGGGTCGACTGATGATATATCAGAATTAACTGCAATATGCAAAAAAGATAA
AAGAATAAAATATTTTCATAAAAAAAATGAAGGACCTGCTGCTGCACGTAACTTAGGTATTAAAAATGCTATAGGAAAAT
ATATTGCTTTCCTTGATTCGGACGATTTATTTTATAAGGATAAAATAGAAATCCAATTAAAGTTTATGGAAGAAAATAAT
TTTATATTTTCTCATACTTCATATCAAAAAATAAATGAAAAAGGAAAATATATCGAATCTGTTCATTCCGGGCTTTTTAG
TGGCAATGTTTTTCCTCAAGTCATACAAACTTGTCCAATAGCAATGCCGACAGTTATGGGAACTTTGACATTATTTCAAG
CAAATTTATTTCCTGAAAATATAAGAAGCGGTGAAGATTGTTGTTCATGGATATCTATTGCTAGTAAAAACTCAATAGGC
GGTATAGACAAAGAATTGTCTAAAGTACGAATTAGCGGTGGTACTAATACGTTTATGGACCCAAATAAATATTCAGTAGG
TTTAATAAATATTACTTCTTATGTTCTTAATGATTCTTATTTAAGTAAATTTAGTCCGTTTACTATTAATTTGTTATTAG
CAGCTGTTACACAATTAAGATTACTAGAAAATAAAAATAAAGACTATAAAAAAAGTAATATTTCTTTTTTCAAAAATAAT
TATGTAATTCAAAAAATACGAACCTATTGCTTTGTGACAAAAATTTTGATTTTATTAACTATTACTTCTATAAGGCAAGA
AGGAATACGTGCAACAATCTCTAGAATACAGAGATGGCTTAAAAAGCATATATAA

Upstream 100 bases:

>100_bases
ATAAACTAATTATTAGTGAAGAAGAAAAATCTATTTTTCTAAAGCTCTATAGAAAATTTAAACAATAAAACTAACATTTT
ATAAATTATTTTTAAAAGTT

Downstream 100 bases:

>100_bases
ATAACTATTCCTCAAGTATCTTAACTTTTGAGCCATCACCAATTTTAGTCATACCTTCGGTAACGACTAAGTCACCTGCT
TTAATATCGTCAGAGATAAT

Product: Glycosyltransferase, two domains

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 604; Mature: 603

Protein sequence:

>604_residues
MTTRKDKPLNIYHTLVSIIIPVYNGANYMKEAINSALAQTYKNIEIIVVNDGSKDNGETERVALSYGDKIRYFHKENGGC
GSALNYGIKNMQGEYFSWLSHDDIYYPNKIEHQVDILNKLDNKDTIIYGGYELIDEKGNSLRYIKPDSVLPINKLNISLL
PLLRGLIHGCSLLMPAKYFHEVGIFNEALPTTQDYDLWFKIFRVAPIHFDESILIKSRFHSEQGSKKISNHNEECNVLWS
SFLHELTEEEMIKMEGSPYLFLTRTATFLSNNTPYKKACDLANTMAKQVLNDTKVSVIIPVYNRINWAIEAIESVLIQTH
KNFEILIIDDGSTDDISELTAICKKDKRIKYFHKKNEGPAAARNLGIKNAIGKYIAFLDSDDLFYKDKIEIQLKFMEENN
FIFSHTSYQKINEKGKYIESVHSGLFSGNVFPQVIQTCPIAMPTVMGTLTLFQANLFPENIRSGEDCCSWISIASKNSIG
GIDKELSKVRISGGTNTFMDPNKYSVGLINITSYVLNDSYLSKFSPFTINLLLAAVTQLRLLENKNKDYKKSNISFFKNN
YVIQKIRTYCFVTKILILLTITSIRQEGIRATISRIQRWLKKHI

Sequences:

>Translated_604_residues
MTTRKDKPLNIYHTLVSIIIPVYNGANYMKEAINSALAQTYKNIEIIVVNDGSKDNGETERVALSYGDKIRYFHKENGGC
GSALNYGIKNMQGEYFSWLSHDDIYYPNKIEHQVDILNKLDNKDTIIYGGYELIDEKGNSLRYIKPDSVLPINKLNISLL
PLLRGLIHGCSLLMPAKYFHEVGIFNEALPTTQDYDLWFKIFRVAPIHFDESILIKSRFHSEQGSKKISNHNEECNVLWS
SFLHELTEEEMIKMEGSPYLFLTRTATFLSNNTPYKKACDLANTMAKQVLNDTKVSVIIPVYNRINWAIEAIESVLIQTH
KNFEILIIDDGSTDDISELTAICKKDKRIKYFHKKNEGPAAARNLGIKNAIGKYIAFLDSDDLFYKDKIEIQLKFMEENN
FIFSHTSYQKINEKGKYIESVHSGLFSGNVFPQVIQTCPIAMPTVMGTLTLFQANLFPENIRSGEDCCSWISIASKNSIG
GIDKELSKVRISGGTNTFMDPNKYSVGLINITSYVLNDSYLSKFSPFTINLLLAAVTQLRLLENKNKDYKKSNISFFKNN
YVIQKIRTYCFVTKILILLTITSIRQEGIRATISRIQRWLKKHI
>Mature_603_residues
TTRKDKPLNIYHTLVSIIIPVYNGANYMKEAINSALAQTYKNIEIIVVNDGSKDNGETERVALSYGDKIRYFHKENGGCG
SALNYGIKNMQGEYFSWLSHDDIYYPNKIEHQVDILNKLDNKDTIIYGGYELIDEKGNSLRYIKPDSVLPINKLNISLLP
LLRGLIHGCSLLMPAKYFHEVGIFNEALPTTQDYDLWFKIFRVAPIHFDESILIKSRFHSEQGSKKISNHNEECNVLWSS
FLHELTEEEMIKMEGSPYLFLTRTATFLSNNTPYKKACDLANTMAKQVLNDTKVSVIIPVYNRINWAIEAIESVLIQTHK
NFEILIIDDGSTDDISELTAICKKDKRIKYFHKKNEGPAAARNLGIKNAIGKYIAFLDSDDLFYKDKIEIQLKFMEENNF
IFSHTSYQKINEKGKYIESVHSGLFSGNVFPQVIQTCPIAMPTVMGTLTLFQANLFPENIRSGEDCCSWISIASKNSIGG
IDKELSKVRISGGTNTFMDPNKYSVGLINITSYVLNDSYLSKFSPFTINLLLAAVTQLRLLENKNKDYKKSNISFFKNNY
VIQKIRTYCFVTKILILLTITSIRQEGIRATISRIQRWLKKHI

Specific function: Unknown

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790044, Length=115, Percent_Identity=38.2608695652174, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI1788372, Length=112, Percent_Identity=36.6071428571429, Blast_Score=67, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI212640903, Length=264, Percent_Identity=25.3787878787879, Blast_Score=74, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.4.1.-

Molecular weight: Translated: 69005; Mature: 68874

Theoretical pI: Translated: 8.64; Mature: 8.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTRKDKPLNIYHTLVSIIIPVYNGANYMKEAINSALAQTYKNIEIIVVNDGSKDNGETE
CCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCE
RVALSYGDKIRYFHKENGGCGSALNYGIKNMQGEYFSWLSHDDIYYPNKIEHQVDILNKL
EEEEECCCEEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHHC
DNKDTIIYGGYELIDEKGNSLRYIKPDSVLPINKLNISLLPLLRGLIHGCSLLMPAKYFH
CCCCEEEECCHHEECCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHH
EVGIFNEALPTTQDYDLWFKIFRVAPIHFDESILIKSRFHSEQGSKKISNHNEECNVLWS
HHCCHHHCCCCCCCHHHHHHHHHHCCCCCCCCEEEHHHHCCCCCCHHHHCCCCHHHHHHH
SFLHELTEEEMIKMEGSPYLFLTRTATFLSNNTPYKKACDLANTMAKQVLNDTKVSVIIP
HHHHHHHHHHHHHCCCCCEEEEEEEEHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEE
VYNRINWAIEAIESVLIQTHKNFEILIIDDGSTDDISELTAICKKDKRIKYFHKKNEGPA
CHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHCCCCEEHHHCCCCCCH
AARNLGIKNAIGKYIAFLDSDDLFYKDKIEIQLKFMEENNFIFSHTSYQKINEKGKYIES
HHHHCCHHHHHHHHHEEECCCCCEEECEEEEEEEEEECCCEEEECCHHHHHHHHHHHHHH
VHSGLFSGNVFPQVIQTCPIAMPTVMGTLTLFQANLFPENIRSGEDCCSWISIASKNSIG
HHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHCCCCCC
GIDKELSKVRISGGTNTFMDPNKYSVGLINITSYVLNDSYLSKFSPFTINLLLAAVTQLR
CCHHHHHEEEECCCCCCCCCCCCCEEEEEEHHHHHHCHHHHHHCCCHHHHHHHHHHHHHH
LLENKNKDYKKSNISFFKNNYVIQKIRTYCFVTKILILLTITSIRQEGIRATISRIQRWL
HHHCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KKHI
HHCC
>Mature Secondary Structure 
TTRKDKPLNIYHTLVSIIIPVYNGANYMKEAINSALAQTYKNIEIIVVNDGSKDNGETE
CCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCE
RVALSYGDKIRYFHKENGGCGSALNYGIKNMQGEYFSWLSHDDIYYPNKIEHQVDILNKL
EEEEECCCEEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHHC
DNKDTIIYGGYELIDEKGNSLRYIKPDSVLPINKLNISLLPLLRGLIHGCSLLMPAKYFH
CCCCEEEECCHHEECCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHH
EVGIFNEALPTTQDYDLWFKIFRVAPIHFDESILIKSRFHSEQGSKKISNHNEECNVLWS
HHCCHHHCCCCCCCHHHHHHHHHHCCCCCCCCEEEHHHHCCCCCCHHHHCCCCHHHHHHH
SFLHELTEEEMIKMEGSPYLFLTRTATFLSNNTPYKKACDLANTMAKQVLNDTKVSVIIP
HHHHHHHHHHHHHCCCCCEEEEEEEEHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEE
VYNRINWAIEAIESVLIQTHKNFEILIIDDGSTDDISELTAICKKDKRIKYFHKKNEGPA
CHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHCCCCEEHHHCCCCCCH
AARNLGIKNAIGKYIAFLDSDDLFYKDKIEIQLKFMEENNFIFSHTSYQKINEKGKYIES
HHHHCCHHHHHHHHHEEECCCCCEEECEEEEEEEEEECCCEEEECCHHHHHHHHHHHHHH
VHSGLFSGNVFPQVIQTCPIAMPTVMGTLTLFQANLFPENIRSGEDCCSWISIASKNSIG
HHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHCCCCCC
GIDKELSKVRISGGTNTFMDPNKYSVGLINITSYVLNDSYLSKFSPFTINLLLAAVTQLR
CCHHHHHEEEECCCCCCCCCCCCCEEEEEEHHHHHHCHHHHHHCCCHHHHHHHHHHHHHH
LLENKNKDYKKSNISFFKNNYVIQKIRTYCFVTKILILLTITSIRQEGIRATISRIQRWL
HHHCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KKHI
HHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11557893 [H]