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The map label for this gene is yqgF [C]

Identifier: 229586597

GI number: 229586597

Start: 450585

End: 451049

Strand: Direct

Name: yqgF [C]

Synonym: RAF_ORF0423

Alternate gene names: 229586597

Gene position: 450585-451049 (Clockwise)

Preceding gene: 229586591

Following gene: 229586598

Centisome position: 35.24

GC content: 30.97

Gene sequence:

>465_bases
ATGATCATAAAAAATCTTCAAGAATTTTATCGGCTTTTAATACCAAATGCTCCGCTTATCGCTATTGATTACGGAAGCAA
AAAATTAGGAATCGCATTATCTAATCAAGAACTTAGTATTGCTATGCCCTTAAATACTATAACCGAGATAAATAAAAAAA
TTGTTATTACTTCCTTGCTTAATATCATCGAGAAATATAAAGTTTGCGGTGTTATAATAGGTCTACCGATTGATATGAGC
GGAGCAGTAACGGAGCAAACAAATATAGTGATGAAATTTGCTGAAGAGCTAGCAAAATCTATAAATTTGCCTATATATTT
ACAAGATGAAAGATTAACTACCAAAGCTGCAAATAATTTGCTTAAATCGTTTGGAGTGAAAAGAAAAGACCGTAATAATA
ACGATGATGCAGTAGCTGCTAGTATGATTCTTGAAACCGTGCTTGATTCTATAAAAAATATTTAA

Upstream 100 bases:

>100_bases
AAGGCTAAAATCGCCGATAATTTAATTAATTTCGTATCTAAATGTTTCTGAATAGTTTTTAGCATAAATAATAATTAATA
AAGTAATTTTTATAACTATC

Downstream 100 bases:

>100_bases
TTAGGAAAGAATTGAGGAGTTGTTGTATGGATCGAAAAACCTACTCAATGTCATCCCCGCGAAAGCGGGGATCCAGCAAA
ATAACTTTAATATTGATATA

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 154

Protein sequence:

>154_residues
MIIKNLQEFYRLLIPNAPLIAIDYGSKKLGIALSNQELSIAMPLNTITEINKKIVITSLLNIIEKYKVCGVIIGLPIDMS
GAVTEQTNIVMKFAEELAKSINLPIYLQDERLTTKAANNLLKSFGVKRKDRNNNDDAVAASMILETVLDSIKNI

Sequences:

>Translated_154_residues
MIIKNLQEFYRLLIPNAPLIAIDYGSKKLGIALSNQELSIAMPLNTITEINKKIVITSLLNIIEKYKVCGVIIGLPIDMS
GAVTEQTNIVMKFAEELAKSINLPIYLQDERLTTKAANNLLKSFGVKRKDRNNNDDAVAASMILETVLDSIKNI
>Mature_154_residues
MIIKNLQEFYRLLIPNAPLIAIDYGSKKLGIALSNQELSIAMPLNTITEINKKIVITSLLNIIEKYKVCGVIIGLPIDMS
GAVTEQTNIVMKFAEELAKSINLPIYLQDERLTTKAANNLLKSFGVKRKDRNNNDDAVAASMILETVLDSIKNI

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_RICAE (C3PN45)

Other databases:

- EMBL:   CP001612
- RefSeq:   YP_002845098.1
- GeneID:   7815095
- GenomeReviews:   CP001612_GR
- KEGG:   raf:RAF_ORF0423
- OMA:   ERSIAMP
- ProtClustDB:   PRK00109
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 17074; Mature: 17074

Theoretical pI: Translated: 9.00; Mature: 9.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIKNLQEFYRLLIPNAPLIAIDYGSKKLGIALSNQELSIAMPLNTITEINKKIVITSLL
CCHHHHHHHHHHHCCCCCEEEEECCCCEEEEEECCCCEEEEECHHHHHHHHHHHHHHHHH
NIIEKYKVCGVIIGLPIDMSGAVTEQTNIVMKFAEELAKSINLPIYLQDERLTTKAANNL
HHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH
LKSFGVKRKDRNNNDDAVAASMILETVLDSIKNI
HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIIKNLQEFYRLLIPNAPLIAIDYGSKKLGIALSNQELSIAMPLNTITEINKKIVITSLL
CCHHHHHHHHHHHCCCCCEEEEECCCCEEEEEECCCCEEEEECHHHHHHHHHHHHHHHHH
NIIEKYKVCGVIIGLPIDMSGAVTEQTNIVMKFAEELAKSINLPIYLQDERLTTKAANNL
HHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH
LKSFGVKRKDRNNNDDAVAASMILETVLDSIKNI
HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA