Click here to switch to the map view.

The map label for this gene is psd

Identifier: 229586490

GI number: 229586490

Start: 328614

End: 329309

Strand: Direct

Name: psd

Synonym: RAF_ORF0302

Alternate gene names: 229586490

Gene position: 328614-329309 (Clockwise)

Preceding gene: 229586489

Following gene: 229586491

Centisome position: 25.7

GC content: 33.91

Gene sequence:

>696_bases
ATGAAACAATATAATGATTTATTTAAAATTATTCACCGCGAAGGATATATATTTATTGCTAGCTTTGCATTAGTAAGTTT
TTTATTAGCATCATTTAATGAAAAACTTGGCTGTATTGGATGTATTGCTACTGCTTGGTGTATTTATTTTTTCCGTAATC
CTGATCGCTTTGTGCCTATAAGTGATGATCTGGTAATAAGTCCTGCAGATGGAATAATTCAAGAAATTAAGGAAGCATTG
CCGCCTCCGGAATTAGGACTTGGTGATGTGGAAATGATTAGAGTTAGTATTTTTCTAAATATTTTTAATGTCCATGTTAA
TAGAATCCCGGCAAACGGAAAAATTTTAGCACTTCATTATAATCCAGGAAAATTTTTTAATGCTTCACTCGATAAAGCTA
GTATTTATAATGAGCGTCAATCAGTATTAATGGAAACTGCTCAAGGTCAGAAAATTGTTTTTGTTCAAATAGCCGGACTT
ATAGCAAGGCGTATAGTTTGTGATTTAGAAGAGGGTAATGAAGTTAAAACGGGCGAGCGATACGGTATAATTCGTTTCGG
TAGCAGAGTAGATGTTTATTTACCGTTGAAAACAGCTTTATTAGTGAGTAAAGGGCAGACTGCTATAGGCGGTGAAACTA
TCATTGCTGATTTTGGACGTAAAAAGACAACAGAATTTAAGTTTGAGAGGAAGTAG

Upstream 100 bases:

>100_bases
AGCTACTCCTCAAGACGAAGATGAAAACGAGAGTGAGAACCAAGAGGATAAAGCAGAGCAGGCATAGTTAAAAATAATAA
GGAGATTCATAGAGATTAAA

Downstream 100 bases:

>100_bases
CCTCATCACTTTAAAACCGTCATTGCGAGCAGCTGTAGGCATGGTTTGTTTATGTCATTCCCGCGTAGGCGGGAGGGAAT
CCAGTGAAACGTATAAAAAA

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MKQYNDLFKIIHREGYIFIASFALVSFLLASFNEKLGCIGCIATAWCIYFFRNPDRFVPISDDLVISPADGIIQEIKEAL
PPPELGLGDVEMIRVSIFLNIFNVHVNRIPANGKILALHYNPGKFFNASLDKASIYNERQSVLMETAQGQKIVFVQIAGL
IARRIVCDLEEGNEVKTGERYGIIRFGSRVDVYLPLKTALLVSKGQTAIGGETIIADFGRKKTTEFKFERK

Sequences:

>Translated_231_residues
MKQYNDLFKIIHREGYIFIASFALVSFLLASFNEKLGCIGCIATAWCIYFFRNPDRFVPISDDLVISPADGIIQEIKEAL
PPPELGLGDVEMIRVSIFLNIFNVHVNRIPANGKILALHYNPGKFFNASLDKASIYNERQSVLMETAQGQKIVFVQIAGL
IARRIVCDLEEGNEVKTGERYGIIRFGSRVDVYLPLKTALLVSKGQTAIGGETIIADFGRKKTTEFKFERK
>Mature_231_residues
MKQYNDLFKIIHREGYIFIASFALVSFLLASFNEKLGCIGCIATAWCIYFFRNPDRFVPISDDLVISPADGIIQEIKEAL
PPPELGLGDVEMIRVSIFLNIFNVHVNRIPANGKILALHYNPGKFFNASLDKASIYNERQSVLMETAQGQKIVFVQIAGL
IARRIVCDLEEGNEVKTGERYGIIRFGSRVDVYLPLKTALLVSKGQTAIGGETIIADFGRKKTTEFKFERK

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 3 subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_RICAE (C3PMT8)

Other databases:

- EMBL:   CP001612
- RefSeq:   YP_002844991.1
- GeneID:   7815302
- GenomeReviews:   CP001612_GR
- KEGG:   raf:RAF_ORF0302
- OMA:   IFMSVFN
- ProtClustDB:   PRK05305
- HAMAP:   MF_00664
- InterPro:   IPR003817
- InterPro:   IPR004428
- TIGRFAMs:   TIGR00164

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 25941; Mature: 25941

Theoretical pI: Translated: 8.59; Mature: 8.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQYNDLFKIIHREGYIFIASFALVSFLLASFNEKLGCIGCIATAWCIYFFRNPDRFVPI
CCHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEC
SDDLVISPADGIIQEIKEALPPPELGLGDVEMIRVSIFLNIFNVHVNRIPANGKILALHY
CCCEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHEEEEEEEEEECCCCEEEEEEE
NPGKFFNASLDKASIYNERQSVLMETAQGQKIVFVQIAGLIARRIVCDLEEGNEVKTGER
CCCCEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHEECCCCCCCCCCCE
YGIIRFGSRVDVYLPLKTALLVSKGQTAIGGETIIADFGRKKTTEFKFERK
EEEEEECCEEEEEECHHEEEEEECCCCCCCCCEEEECCCCCCCCCEEECCC
>Mature Secondary Structure
MKQYNDLFKIIHREGYIFIASFALVSFLLASFNEKLGCIGCIATAWCIYFFRNPDRFVPI
CCHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEC
SDDLVISPADGIIQEIKEALPPPELGLGDVEMIRVSIFLNIFNVHVNRIPANGKILALHY
CCCEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHEEEEEEEEEECCCCEEEEEEE
NPGKFFNASLDKASIYNERQSVLMETAQGQKIVFVQIAGLIARRIVCDLEEGNEVKTGER
CCCCEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHEECCCCCCCCCCCE
YGIIRFGSRVDVYLPLKTALLVSKGQTAIGGETIIADFGRKKTTEFKFERK
EEEEEECCEEEEEECHHEEEEEECCCCCCCCCEEEECCCCCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA