Click here to switch to the map view.

The map label for this gene is sdhD [H]

Identifier: 229586367

GI number: 229586367

Start: 168930

End: 169310

Strand: Direct

Name: sdhD [H]

Synonym: RAF_ORF0158

Alternate gene names: 229586367

Gene position: 168930-169310 (Clockwise)

Preceding gene: 229586366

Following gene: 229586368

Centisome position: 13.21

GC content: 28.61

Gene sequence:

>381_bases
ATGGTATATGATTTTAAAGCAGAAATTGTAAAAGCAAAAAATAGCGGTTCTGCTAAAAGCGGTTCTCATCATTGGTTATT
GCAAAGAGTAACGGGGATTATATTAGCTTTATGTTCTGTGTGGCTAATATATTTTATGTTAACCAACAAAAATAATGATA
TAAATATTATTATGTTGTGGGAACTTAAAAAGCCTTTTAATGTAGTAGCTTTGTTAATTACGGTGGTTATTTCGTTGTAT
CATGCGATGCTTGGTATGCGTGTAGTAATTGAAGATTATATAAGTTATCACAAATTACGTAATACATTGATTATAATAGT
GCAATTATTTTGCATTGTTACTATTGTAGCTTTTGTAGTAGTGCTATTTTATAAAGGATAA

Upstream 100 bases:

>100_bases
CAATCTCAGAAATAATAACAAATGCCTGAGATTGTTTCGTCAATTGCTATGCAATTTCCTCGCAATGACGAAAAGCTAAA
ACAAATAATAGAGAAAATTA

Downstream 100 bases:

>100_bases
AAATTGTCATACCGCGGCTTGACCGCGGTATCCAGAAAACAATATTGTGTATTGAATTACTGGACCCCGTGGTCAAGCCA
TGGGGTGACAGAGGTAGACA

Product: Succinate dehydrogenase hydrophobic membrane anchor protein

Products: fumarate; reduced acceptor

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 126

Protein sequence:

>126_residues
MVYDFKAEIVKAKNSGSAKSGSHHWLLQRVTGIILALCSVWLIYFMLTNKNNDINIIMLWELKKPFNVVALLITVVISLY
HAMLGMRVVIEDYISYHKLRNTLIIIVQLFCIVTIVAFVVVLFYKG

Sequences:

>Translated_126_residues
MVYDFKAEIVKAKNSGSAKSGSHHWLLQRVTGIILALCSVWLIYFMLTNKNNDINIIMLWELKKPFNVVALLITVVISLY
HAMLGMRVVIEDYISYHKLRNTLIIIVQLFCIVTIVAFVVVLFYKG
>Mature_126_residues
MVYDFKAEIVKAKNSGSAKSGSHHWLLQRVTGIILALCSVWLIYFMLTNKNNDINIIMLWELKKPFNVVALLITVVISLY
HAMLGMRVVIEDYISYHKLRNTLIIIVQLFCIVTIVAFVVVLFYKG

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2142

COG function: function code C; Succinate dehydrogenase, hydrophobic anchor subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014312
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 14462; Mature: 14462

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVYDFKAEIVKAKNSGSAKSGSHHWLLQRVTGIILALCSVWLIYFMLTNKNNDINIIMLW
CCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
ELKKPFNVVALLITVVISLYHAMLGMRVVIEDYISYHKLRNTLIIIVQLFCIVTIVAFVV
ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLFYKG
HHHCCC
>Mature Secondary Structure
MVYDFKAEIVKAKNSGSAKSGSHHWLLQRVTGIILALCSVWLIYFMLTNKNNDINIIMLW
CCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
ELKKPFNVVALLITVVISLYHAMLGMRVVIEDYISYHKLRNTLIIIVQLFCIVTIVAFVV
ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLFYKG
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11557893 [H]