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The map label for this gene is secF [H]

Identifier: 229586352

GI number: 229586352

Start: 154743

End: 155669

Strand: Direct

Name: secF [H]

Synonym: RAF_ORF0143

Alternate gene names: 229586352

Gene position: 154743-155669 (Clockwise)

Preceding gene: 229586350

Following gene: 229586353

Centisome position: 12.1

GC content: 33.12

Gene sequence:

>927_bases
ATGCAAATTTATCCTTTAAGACTTTTACCTAATAAAATCGATTTTGATTTTATGAATTTTAAAAAAGTTAGTTACACTTT
CTCAATTATTTTATCACTCATTAGCTTTATTTGGATCGGTATATATAAATTTAATTTCGGTATTGATTTTGCCGGCGGTA
TAGTTATTGAAGTAAGGCTTGATCAAGCTCCTGATTTGCCAAAAATGCGTGGGGTTCTAGGCAAGCTTGGAATAGGTGAG
GTGGTCTTACAGAATTTCGGTAGTGAGCGTGATTTATCGATTAGATTCGGTAGTAGTAGTGAAGAAAATCTCATGAAAAA
TATTGAGTTAATTAAAGGATTTTTGCAAAGTAATTTTCCGTATAAGTTTGAATATCGTAAGGTAGATTTTGTCGGTCCGC
AAGTCGGTAGGCAGCTAATAGAAGCGGGGGCTATGGCGATGCTATTCTCTTTCTTAGCGATTATGGTTTATATTTGGGTG
CGTTTTGAGTGGTATTTTGGTCTTGGTATACTTATCGCCTTAGTGCATGACGTAATACTCGCTCTTGGGTTTATGAGTAT
GACAAAGCTTGATTTTAACTTAAGTACTATTGCTGCAGTGTTAACTATTATAGGTTATTCCGTTAATGATTCGGTAGTAA
TATATGATAGGATTAGAGAAAATTTACGTAAATATCATAAAAAAAATATCACGGACATTATAAATTTAAGTATTAATGAG
ACTTTATCAAGAACTATTTTAACTGTCATTACCACGCTACTTGCCAATTTAGCCCTTATTCTTTTTGGCGGTGAGGCAAT
CCGTAGTTTTAGCGTACTTGTATTTTTTGGGATAATAGCCGGTACTTATTCCTCAATTTTTATCTCTGCTCCGATACTTA
CAATGTTTGTTAATAGGAAGTTTAATAAAAAAGTAATAGAAAGGTAA

Upstream 100 bases:

>100_bases
ATTGTTCTTTTACTACTACTTCTGACATAAAAAATCATTTAACCTTTTTGAATTTACTATATAATACAAATATAATCCTT
ATTCAACAAAATATATAATA

Downstream 100 bases:

>100_bases
AGAATCATCATTGCGAGCAGGCATTGTTGCTTGGGCCGGCTTTATTGTCATTGTGAGTGGCCATAGCCTGCATGACAATC
TCAGGATTTTGGCACGAGGT

Product: preprotein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MQIYPLRLLPNKIDFDFMNFKKVSYTFSIILSLISFIWIGIYKFNFGIDFAGGIVIEVRLDQAPDLPKMRGVLGKLGIGE
VVLQNFGSERDLSIRFGSSSEENLMKNIELIKGFLQSNFPYKFEYRKVDFVGPQVGRQLIEAGAMAMLFSFLAIMVYIWV
RFEWYFGLGILIALVHDVILALGFMSMTKLDFNLSTIAAVLTIIGYSVNDSVVIYDRIRENLRKYHKKNITDIINLSINE
TLSRTILTVITTLLANLALILFGGEAIRSFSVLVFFGIIAGTYSSIFISAPILTMFVNRKFNKKVIER

Sequences:

>Translated_308_residues
MQIYPLRLLPNKIDFDFMNFKKVSYTFSIILSLISFIWIGIYKFNFGIDFAGGIVIEVRLDQAPDLPKMRGVLGKLGIGE
VVLQNFGSERDLSIRFGSSSEENLMKNIELIKGFLQSNFPYKFEYRKVDFVGPQVGRQLIEAGAMAMLFSFLAIMVYIWV
RFEWYFGLGILIALVHDVILALGFMSMTKLDFNLSTIAAVLTIIGYSVNDSVVIYDRIRENLRKYHKKNITDIINLSINE
TLSRTILTVITTLLANLALILFGGEAIRSFSVLVFFGIIAGTYSSIFISAPILTMFVNRKFNKKVIER
>Mature_308_residues
MQIYPLRLLPNKIDFDFMNFKKVSYTFSIILSLISFIWIGIYKFNFGIDFAGGIVIEVRLDQAPDLPKMRGVLGKLGIGE
VVLQNFGSERDLSIRFGSSSEENLMKNIELIKGFLQSNFPYKFEYRKVDFVGPQVGRQLIEAGAMAMLFSFLAIMVYIWV
RFEWYFGLGILIALVHDVILALGFMSMTKLDFNLSTIAAVLTIIGYSVNDSVVIYDRIRENLRKYHKKNITDIINLSINE
TLSRTILTVITTLLANLALILFGGEAIRSFSVLVFFGIIAGTYSSIFISAPILTMFVNRKFNKKVIER

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=280, Percent_Identity=37.8571428571429, Blast_Score=213, Evalue=2e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 35019; Mature: 35019

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: PS50156 SSD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIYPLRLLPNKIDFDFMNFKKVSYTFSIILSLISFIWIGIYKFNFGIDFAGGIVIEVRL
CCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCEECCCEEEEEEE
DQAPDLPKMRGVLGKLGIGEVVLQNFGSERDLSIRFGSSSEENLMKNIELIKGFLQSNFP
CCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCC
YKFEYRKVDFVGPQVGRQLIEAGAMAMLFSFLAIMVYIWVRFEWYFGLGILIALVHDVIL
EEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALGFMSMTKLDFNLSTIAAVLTIIGYSVNDSVVIYDRIRENLRKYHKKNITDIINLSINE
HHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHCCCHHHEECCHHH
TLSRTILTVITTLLANLALILFGGEAIRSFSVLVFFGIIAGTYSSIFISAPILTMFVNRK
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
FNKKVIER
HHHHHHCC
>Mature Secondary Structure
MQIYPLRLLPNKIDFDFMNFKKVSYTFSIILSLISFIWIGIYKFNFGIDFAGGIVIEVRL
CCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCEECCCEEEEEEE
DQAPDLPKMRGVLGKLGIGEVVLQNFGSERDLSIRFGSSSEENLMKNIELIKGFLQSNFP
CCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCC
YKFEYRKVDFVGPQVGRQLIEAGAMAMLFSFLAIMVYIWVRFEWYFGLGILIALVHDVIL
EEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALGFMSMTKLDFNLSTIAAVLTIIGYSVNDSVVIYDRIRENLRKYHKKNITDIINLSINE
HHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHCCCHHHEECCHHH
TLSRTILTVITTLLANLALILFGGEAIRSFSVLVFFGIIAGTYSSIFISAPILTMFVNRK
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
FNKKVIER
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA