| Definition | Burkholderia pseudomallei K96243 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_006351 |
| Length | 3,173,005 |
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The map label for this gene is ylbK [H]
Identifier: 229269502
GI number: 229269502
Start: 861344
End: 864193
Strand: Reverse
Name: ylbK [H]
Synonym: BPSS0632
Alternate gene names: 229269502
Gene position: 864193-861344 (Counterclockwise)
Preceding gene: 53721676
Following gene: 53721664
Centisome position: 27.24
GC content: 69.72
Gene sequence:
>2850_bases ATGACGGTGCTCGCCTCTTCCGCCCGTGCGGGCTTTCGCGTTCCCGGCTTCGTGGCCGCCCTGCTGTTCGTCTGCGCCGC GACGGGACGGCCCGCACCCGCCACCGCGGCCGATACCGCAACCGTGGCGTCCGCCGCGACCGCCGCCGCAAGCGCCGCGG GTGCGCCGGCTTCGACAACGCTCCCGCCCGCCGCAACGCCGACGCGCGTCGCCTCGTCGGCCGTGGCCGCTTCGTCCTCC GCCTCGTCCCCCGCCTCGTCCTCCGCTTCGTCCTCCGCTTCGTCCTCCGCTTCGTCCTCCGCTTCGTCCTCCGCTTCGTC CTTCGCTTCGTCCTCCGCTTCGTCCTCCGCTTCGTCCTTCGCTTCGTCCTCCGCTTCGGCCGCCACGCCCGCGAACGCTG CGGCCGCGTGGTCGTGGACCGCCGCCCGGCGCGCCGACGCGCCGGATTCGAGCTCCGTCTCGAATGCCGTCTCGAATAGC GGATCGAACGTCGCCGGGGCCGCCGCCGCCCACGGCCCCCACGCCCCTCACACCGTGCCCGACGCGGGCGCGGGCGCGCC CTCGGCGCCGACGCCCCCCACCGCCGCCACGCCGGCCGCCGCAGGCGCCTCGGCGTCCACGGCAGCCGCGCCGACGCCGG CCGCGACGGACACCCTCGTTTGCATGCCGGACGGCGGCGGCCCGCACCGGCCGGCGATCGGCCTCGTGCTGTCGGGCGGC GGCGCGCGGGGCTACGCGCATCTGGGCGTGCTGAAGGTGCTGGAAGCGAACCGGATTCCGGTCGACTGCATCGCCGCGAC GAGCATGGGCGCGGTCGTCGGCGGCCTGTACGCGACCGGCATGACCGCGCAGGACATGCAGCGGCGGCTGTCGCAGGTGA ACCTCGCCGACATCGCGTTCGACGTGACCGAGCGCTCGGACCTGCCGCAGAAGAAGCGCGAGGACGAACGCCTCTATATC GACAGCCTGACGATCGGCTTCGATTCGAAGGGCTTCAAGGCGCCCGTCGGGCTCGTGCAGGGCAACCGGCTGCAGGCGCT CCTCGCGAACTGGACCGCCGCCGTGCCGACGAGCCAGCCGTTCGACCGGCTGCCGATCCCGTTCCGAGCGATCGCGACCG ATCTGCAGACCGGCCAGAAGGTGGTGCTCGATCACGGCTCGCTGCCGCTCGCGATCCGCGCGAGCATGGCGCTGCCGGGC CTGTTCTCGCCCGCCGAGATCGACGGCCGCGCGCTCGTGGACGGCGGGCTCGTCGGCAACCTGCCCGTCGACGCCGCGCG CGCGATGGGCGCGGACGTCGTGATCGCGGTCGACATCGGCTCGCCGCTGCGCCCGCTGGACGCGCTAGCGTCGCCCGCCG ACGTGATGCAGCAGATGATCGGCATCCTGATCCGGCAGAACGTCGCCGAGCAGCGCAAGCAACTGACGGCGAACGACATC CTGCTGCAGCCGGACCTCGGCAAGCAGACGTTCACCGATTTTCAGAACGCGAACCAGGCGATCGCCGCGGGCGAGGCCGC CGCCGTCGCCGCGCTGCCGCGGCTCGCGCGCTACGCGCTGTCGCCCGAGCAATACGAAGCGTATCGGGCCGCCCACGCGC GCCCGCAGCAGCCGATCCGCATCACGTCGATCGAGATCCGCACCAACGGCGCGTCGGTGCCCAAGCAGATCGTGCGCAAT GCGCTGCACGTGAAGCCGGGCGACGTCTACGATCCGCAGGCGGTCAGCGCCGATCTGCTGTCGCTCACGACGAGCGGCAA TTTCGAGAACGTCACGCAGCAGATCATCAACGAAGGCGACGAGCACCGGCTCGTGATCGACGCGCAGGAGAAGTACTGGG GGCCGAACTTCCTGCTGTTCGGGCTGGGGATGTCGAGCAGTTCCACCGACGAAGGCGGCTTCCGGCTGCATCTGGGCTAC CGGCGGCCCTGGCTCACGCCGTCCGGCCTCGAATTCCGCGCGGATACGACGCTCGGCAGCGACATGCAGTCGGTGCACGT CGAGTTGCGCCAGCCGCTGTCGAACAAGACCGGCTACTACGTCGCGCCGTACGCGGACTACAAGCGGCGGTTCGCGAACC TCTACAATGGGGAAAGCGACGTCAAGGTCACGCAATACCGGATCCAGACCTCACGTGCAGGGCTCGATCTCGGGCTGCCG CTTGCGCGGCTCGGGGATTTCCGGATCGGCCTCGCCTATACGCACCTTTCGGCCGCCCCCTCATACAGCCTCCTGCTGGA CAGCTGGGTCGACGACGACGGCAACTCGCTGTCCTTCCCATCCTGGTACGCACGGCAGGTCAGCGCGCGCGCCCGGCTCG TCATCGACCAGCTCGACGATCCGCTCTTCCCGCGCAAGGGTTACTTCGCGGAATTCCGCGCCGAACGCTCGCTCGCCACG AGCGAGGACAAGTTCACCGACGTCTACGGCAAGTTGATGGTCGCCGAGCGCTTCGGCCGGCACAGCGTGAGCGCGAGCGT TGAGGCGGGCAAGAGCTTCGGCGGCGTGAATCTCAGCAATCCGTTCGGCTACACGCTCGGCGGCTTCCAGCATCTATCGG CGTACGCGGCCGACCAGTTGAGCGGCGATGCGCTTCTCTATGGACAGGTCACCTACATGAATCAGCTGGCGACGTTCAAT GCGTCTCCGATCAAGGCGCTCTACCTCGGCGCGAGCGCGGAAGTCGGTAATGTATGGTCGCTCGACCCGGCGTTTCCGAG CGGTCCGCTCAAGCAGAGCTACACGTTCTTCACCAGCCTGATCACATCGTTCGGGCCCGTGTACGTCGGTATGGCGTTCG CACCCGGCGGGCGGCGCAACATCTACTTCCAGCTCGGCCGCACGTATTGA
Upstream 100 bases:
>100_bases CGCGTGGTCTCGGCCCGACAAAAGCGGTACTCTCTCGCTTTTGCCGATTCCGGATCGGCGCTCCCGACCGTTTCAGTCCG ACCACACCAAAGCAACGATA
Downstream 100 bases:
>100_bases TCCGCGCACCGTGGATGGTGCCCTGGCGCCGCCGTTTCCGGACACGGCAAGTAACGGACGCTCGAGCGGGCGTCCGCATG CAGCGAACTGATTCAAGGAA
Product: patatin-like phospholipase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 949; Mature: 948
Protein sequence:
>949_residues MTVLASSARAGFRVPGFVAALLFVCAATGRPAPATAADTATVASAATAAASAAGAPASTTLPPAATPTRVASSAVAASSS ASSPASSSASSSASSSASSSASSSASSFASSSASSSASSFASSSASAATPANAAAAWSWTAARRADAPDSSSVSNAVSNS GSNVAGAAAAHGPHAPHTVPDAGAGAPSAPTPPTAATPAAAGASASTAAAPTPAATDTLVCMPDGGGPHRPAIGLVLSGG GARGYAHLGVLKVLEANRIPVDCIAATSMGAVVGGLYATGMTAQDMQRRLSQVNLADIAFDVTERSDLPQKKREDERLYI DSLTIGFDSKGFKAPVGLVQGNRLQALLANWTAAVPTSQPFDRLPIPFRAIATDLQTGQKVVLDHGSLPLAIRASMALPG LFSPAEIDGRALVDGGLVGNLPVDAARAMGADVVIAVDIGSPLRPLDALASPADVMQQMIGILIRQNVAEQRKQLTANDI LLQPDLGKQTFTDFQNANQAIAAGEAAAVAALPRLARYALSPEQYEAYRAAHARPQQPIRITSIEIRTNGASVPKQIVRN ALHVKPGDVYDPQAVSADLLSLTTSGNFENVTQQIINEGDEHRLVIDAQEKYWGPNFLLFGLGMSSSSTDEGGFRLHLGY RRPWLTPSGLEFRADTTLGSDMQSVHVELRQPLSNKTGYYVAPYADYKRRFANLYNGESDVKVTQYRIQTSRAGLDLGLP LARLGDFRIGLAYTHLSAAPSYSLLLDSWVDDDGNSLSFPSWYARQVSARARLVIDQLDDPLFPRKGYFAEFRAERSLAT SEDKFTDVYGKLMVAERFGRHSVSASVEAGKSFGGVNLSNPFGYTLGGFQHLSAYAADQLSGDALLYGQVTYMNQLATFN ASPIKALYLGASAEVGNVWSLDPAFPSGPLKQSYTFFTSLITSFGPVYVGMAFAPGGRRNIYFQLGRTY
Sequences:
>Translated_949_residues MTVLASSARAGFRVPGFVAALLFVCAATGRPAPATAADTATVASAATAAASAAGAPASTTLPPAATPTRVASSAVAASSS ASSPASSSASSSASSSASSSASSSASSFASSSASSSASSFASSSASAATPANAAAAWSWTAARRADAPDSSSVSNAVSNS GSNVAGAAAAHGPHAPHTVPDAGAGAPSAPTPPTAATPAAAGASASTAAAPTPAATDTLVCMPDGGGPHRPAIGLVLSGG GARGYAHLGVLKVLEANRIPVDCIAATSMGAVVGGLYATGMTAQDMQRRLSQVNLADIAFDVTERSDLPQKKREDERLYI DSLTIGFDSKGFKAPVGLVQGNRLQALLANWTAAVPTSQPFDRLPIPFRAIATDLQTGQKVVLDHGSLPLAIRASMALPG LFSPAEIDGRALVDGGLVGNLPVDAARAMGADVVIAVDIGSPLRPLDALASPADVMQQMIGILIRQNVAEQRKQLTANDI LLQPDLGKQTFTDFQNANQAIAAGEAAAVAALPRLARYALSPEQYEAYRAAHARPQQPIRITSIEIRTNGASVPKQIVRN ALHVKPGDVYDPQAVSADLLSLTTSGNFENVTQQIINEGDEHRLVIDAQEKYWGPNFLLFGLGMSSSSTDEGGFRLHLGY RRPWLTPSGLEFRADTTLGSDMQSVHVELRQPLSNKTGYYVAPYADYKRRFANLYNGESDVKVTQYRIQTSRAGLDLGLP LARLGDFRIGLAYTHLSAAPSYSLLLDSWVDDDGNSLSFPSWYARQVSARARLVIDQLDDPLFPRKGYFAEFRAERSLAT SEDKFTDVYGKLMVAERFGRHSVSASVEAGKSFGGVNLSNPFGYTLGGFQHLSAYAADQLSGDALLYGQVTYMNQLATFN ASPIKALYLGASAEVGNVWSLDPAFPSGPLKQSYTFFTSLITSFGPVYVGMAFAPGGRRNIYFQLGRTY >Mature_948_residues TVLASSARAGFRVPGFVAALLFVCAATGRPAPATAADTATVASAATAAASAAGAPASTTLPPAATPTRVASSAVAASSSA SSPASSSASSSASSSASSSASSSASSFASSSASSSASSFASSSASAATPANAAAAWSWTAARRADAPDSSSVSNAVSNSG SNVAGAAAAHGPHAPHTVPDAGAGAPSAPTPPTAATPAAAGASASTAAAPTPAATDTLVCMPDGGGPHRPAIGLVLSGGG ARGYAHLGVLKVLEANRIPVDCIAATSMGAVVGGLYATGMTAQDMQRRLSQVNLADIAFDVTERSDLPQKKREDERLYID SLTIGFDSKGFKAPVGLVQGNRLQALLANWTAAVPTSQPFDRLPIPFRAIATDLQTGQKVVLDHGSLPLAIRASMALPGL FSPAEIDGRALVDGGLVGNLPVDAARAMGADVVIAVDIGSPLRPLDALASPADVMQQMIGILIRQNVAEQRKQLTANDIL LQPDLGKQTFTDFQNANQAIAAGEAAAVAALPRLARYALSPEQYEAYRAAHARPQQPIRITSIEIRTNGASVPKQIVRNA LHVKPGDVYDPQAVSADLLSLTTSGNFENVTQQIINEGDEHRLVIDAQEKYWGPNFLLFGLGMSSSSTDEGGFRLHLGYR RPWLTPSGLEFRADTTLGSDMQSVHVELRQPLSNKTGYYVAPYADYKRRFANLYNGESDVKVTQYRIQTSRAGLDLGLPL ARLGDFRIGLAYTHLSAAPSYSLLLDSWVDDDGNSLSFPSWYARQVSARARLVIDQLDDPLFPRKGYFAEFRAERSLATS EDKFTDVYGKLMVAERFGRHSVSASVEAGKSFGGVNLSNPFGYTLGGFQHLSAYAADQLSGDALLYGQVTYMNQLATFNA SPIKALYLGASAEVGNVWSLDPAFPSGPLKQSYTFFTSLITSFGPVYVGMAFAPGGRRNIYFQLGRTY
Specific function: Unknown
COG id: COG1752
COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 patatin domain [H]
Homologues:
Organism=Homo sapiens, GI148727335, Length=217, Percent_Identity=37.7880184331797, Blast_Score=113, Evalue=1e-24, Organism=Homo sapiens, GI148727290, Length=217, Percent_Identity=37.7880184331797, Blast_Score=112, Evalue=1e-24, Organism=Escherichia coli, GI226510936, Length=323, Percent_Identity=28.4829721362229, Blast_Score=107, Evalue=4e-24, Organism=Saccharomyces cerevisiae, GI6323581, Length=220, Percent_Identity=34.0909090909091, Blast_Score=101, Evalue=5e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016035 - InterPro: IPR001423 - InterPro: IPR002641 [H]
Pfam domain/function: PF01734 Patatin [H]
EC number: NA
Molecular weight: Translated: 98770; Mature: 98639
Theoretical pI: Translated: 7.23; Mature: 7.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVLASSARAGFRVPGFVAALLFVCAATGRPAPATAADTATVASAATAAASAAGAPASTT CCEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC LPPAATPTRVASSAVAASSSASSPASSSASSSASSSASSSASSSASSFASSSASSSASSF CCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHH ASSSASAATPANAAAAWSWTAARRADAPDSSSVSNAVSNSGSNVAGAAAAHGPHAPHTVP HCCCCCCCCCCCCCCEEEEHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC DAGAGAPSAPTPPTAATPAAAGASASTAAAPTPAATDTLVCMPDGGGPHRPAIGLVLSGG CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECC GARGYAHLGVLKVLEANRIPVDCIAATSMGAVVGGLYATGMTAQDMQRRLSQVNLADIAF CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHEE DVTERSDLPQKKREDERLYIDSLTIGFDSKGFKAPVGLVQGNRLQALLANWTAAVPTSQP ECCCCCCCCHHHCCCCEEEEEEEEECCCCCCCCCCCCEECCCHHHHHHHCCCCCCCCCCC FDRLPIPFRAIATDLQTGQKVVLDHGSLPLAIRASMALPGLFSPAEIDGRALVDGGLVGN CCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCEEECCCEECC LPVDAARAMGADVVIAVDIGSPLRPLDALASPADVMQQMIGILIRQNVAEQRKQLTANDI CCHHHHHHCCCCEEEEEECCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHCE LLQPDLGKQTFTDFQNANQAIAAGEAAAVAALPRLARYALSPEQYEAYRAAHARPQQPIR EECCCCCHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCEE ITSIEIRTNGASVPKQIVRNALHVKPGDVYDPQAVSADLLSLTTSGNFENVTQQIINEGD EEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHEEECCCCHHHHHHHHHCCCC EHRLVIDAQEKYWGPNFLLFGLGMSSSSTDEGGFRLHLGYRRPWLTPSGLEFRADTTLGS CCEEEEECHHHCCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCEEEECCCCCC DMQSVHVELRQPLSNKTGYYVAPYADYKRRFANLYNGESDVKVTQYRIQTSRAGLDLGLP CHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHCCCCCCEEEEEEEEHHHCCCCCCCC LARLGDFRIGLAYTHLSAAPSYSLLLDSWVDDDGNSLSFPSWYARQVSARARLVIDQLDD HHHHCCEEEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC PLFPRKGYFAEFRAERSLATSEDKFTDVYGKLMVAERFGRHSVSASVEAGKSFGGVNLSN CCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCC PFGYTLGGFQHLSAYAADQLSGDALLYGQVTYMNQLATFNASPIKALYLGASAEVGNVWS CCCCCCCHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCCEEEEECCCCCCCCEEE LDPAFPSGPLKQSYTFFTSLITSFGPVYVGMAFAPGGRRNIYFQLGRTY CCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEEECCCC >Mature Secondary Structure TVLASSARAGFRVPGFVAALLFVCAATGRPAPATAADTATVASAATAAASAAGAPASTT CEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC LPPAATPTRVASSAVAASSSASSPASSSASSSASSSASSSASSSASSFASSSASSSASSF CCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHH ASSSASAATPANAAAAWSWTAARRADAPDSSSVSNAVSNSGSNVAGAAAAHGPHAPHTVP HCCCCCCCCCCCCCCEEEEHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC DAGAGAPSAPTPPTAATPAAAGASASTAAAPTPAATDTLVCMPDGGGPHRPAIGLVLSGG CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECC GARGYAHLGVLKVLEANRIPVDCIAATSMGAVVGGLYATGMTAQDMQRRLSQVNLADIAF CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHEE DVTERSDLPQKKREDERLYIDSLTIGFDSKGFKAPVGLVQGNRLQALLANWTAAVPTSQP ECCCCCCCCHHHCCCCEEEEEEEEECCCCCCCCCCCCEECCCHHHHHHHCCCCCCCCCCC FDRLPIPFRAIATDLQTGQKVVLDHGSLPLAIRASMALPGLFSPAEIDGRALVDGGLVGN CCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCEEECCCEECC LPVDAARAMGADVVIAVDIGSPLRPLDALASPADVMQQMIGILIRQNVAEQRKQLTANDI CCHHHHHHCCCCEEEEEECCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHCE LLQPDLGKQTFTDFQNANQAIAAGEAAAVAALPRLARYALSPEQYEAYRAAHARPQQPIR EECCCCCHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCEE ITSIEIRTNGASVPKQIVRNALHVKPGDVYDPQAVSADLLSLTTSGNFENVTQQIINEGD EEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHEEECCCCHHHHHHHHHCCCC EHRLVIDAQEKYWGPNFLLFGLGMSSSSTDEGGFRLHLGYRRPWLTPSGLEFRADTTLGS CCEEEEECHHHCCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCEEEECCCCCC DMQSVHVELRQPLSNKTGYYVAPYADYKRRFANLYNGESDVKVTQYRIQTSRAGLDLGLP CHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHCCCCCCEEEEEEEEHHHCCCCCCCC LARLGDFRIGLAYTHLSAAPSYSLLLDSWVDDDGNSLSFPSWYARQVSARARLVIDQLDD HHHHCCEEEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC PLFPRKGYFAEFRAERSLATSEDKFTDVYGKLMVAERFGRHSVSASVEAGKSFGGVNLSN CCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCC PFGYTLGGFQHLSAYAADQLSGDALLYGQVTYMNQLATFNASPIKALYLGASAEVGNVWS CCCCCCCHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCCEEEEECCCCCCCCEEE LDPAFPSGPLKQSYTFFTSLITSFGPVYVGMAFAPGGRRNIYFQLGRTY CCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]