| Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
|---|---|
| Accession | NC_007005 |
| Length | 6,093,698 |
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The map label for this gene is maeA [H]
Identifier: 229170802
GI number: 229170802
Start: 1756261
End: 1757952
Strand: Direct
Name: maeA [H]
Synonym: Psyr_1561
Alternate gene names: 229170802
Gene position: 1756261-1757952 (Clockwise)
Preceding gene: 66044805
Following gene: 66044807
Centisome position: 28.82
GC content: 60.17
Gene sequence:
>1692_bases ATGACCAAAACTTCGCGACCTTTGTACATTTCCTATGCAGGACCCTCACTGCTGGAAATGCCCCTGCTGAACAAAGGCAG TGCCTTCACCCCGCAAGAGCGGGTCGAATTCAATCTGATTGGTCTCCTGCCGCAGAACGTAGAGACGATCGAAGAGCAAG TCACCCGGGTCTACAGCCAGTACAAACAGTGTGCGAGCGACCTGGACAAGCATATCTACCTGCGTTCGATCCAGGACAAC AACGAAACCCTGTTTTTCCGTCTGCTCGACTCCCACCTGGACGAGATGCTGCCGATCATCTACACGCCGACGGTGGGGCA GGCCTGTCAGGAATTCTCCAAGATCTACCGCACGCATCGCGGCCTGTTCATTTCCTACCCCGAGCGTGACCGCATCGATG ACATTTTGCGCAGCGCGACCAAGGATCGGATCAAGATCATTGTCGTGACCGACAGCGAGCGAATTCTCGGCCTGGGCGAT CAGGGCATCGGCGGCATGGGCATTCCGATCGGCAAACTGTCGTTGTACACCGCTTGCGGCGGGATCAGCCCGGCGTACAC GCTGCCGATCGTGCTGGATGTCGGCACCAACAATCGTGAGCTGCTGGACGACCCGATGTACATGGGCTGGCGTCACGAGC GGGTATCGGGCAAGGAATACGAAGACTTCATCGCGCTGTTCATCGACGCGGTGCAGCGTCGCTGGCCGGACGTGCTGTTG CAGTTTGAAGATTTCGCCCAGTCCAACGCCATGCCGCTGCTCGAAAAGTATCGCGACGAACTGTGCTGCTTCAACGATGA CATCCAGGGCACCGCTTCGGTTGCCGTGGGTACGTTGCTGGCGGCCTGCAAGGCCAAGAATGAAACCCTCGGCCAGCAGA AGGTGGTGTTTGTCGGAGCCGGTTCGGCAGGCTGCGGGATCGCCGAGCACATCATCGCAGCGATGCGCATTGAAGGCCTG AGCGAAAGCGAAGCGCGCAAACGTATTTTCATGGTTGATCGTTTCGGCCTGTTGACCGAAAGCATGGACAACCTGCTCGA CTTCCAGAAACGACTGGCGCAAAAGACCGCCGACGTGTCTGGCTGGACTGCCGGCTCGGAAGCCTTCCCACAGTTGCTCG ACGTGGTCACCCACGCCGGCGCCACCGTAATGATCGGTGTGTCCGGGCAGCGCGGTCTGTTCACCGAGCAGGTGATTCGC GAACTGCACAAGCATTGCGCCAAACCCCTGGTCATGCCGCTGTCCAATCCGACGTCCAAAGTGGAAGCCACGCCGGAAGA AATCCTGCGCTGGACCGACGGCAATGCGCTGGTGGCCACCGGCAGTCCGTTTGCGCCAGTGGAAATCAACGGTCGCACGG TGCATATCGCGCAGTGCAACAACTCCTACATCTTTCCGGGCATCGGCCTCGGCGTGGTGGCCTGCAAGGCATCGCGCATC ACTGACCGGATGCTCATGGCGGCGTCCAATGCGCTGGCCGAGTGCTCGCCGATGGTGACAGGGAAGGGCGATGCGGTGTT GCCGCCGCTCAAGGAAATCCAGCAGGTCAGCCGCAAGATCGCGTTGGCTGTGGCCAGGGAAGCGCAGGCCGAAGGGCTGG CGCTGGAAACCACCGAAGAGGCACTGCTTGAGGCCATCGAGCGTAATTTCTGGTTGCCGGGCTACCGGGCCTACCGCCGT CGCTCGGTCTGA
Upstream 100 bases:
>100_bases GAGAACTGGCGACAAGAAAAAACAACAAGAACTGAGCCAGGCTGCCCGCCCCGGTCGACGTAAAGAATTAATGAGTAGAC GAAAAAGGCGATTAGAGAAA
Downstream 100 bases:
>100_bases TCAGGCGCATTTGAAAGGATGACGTCTCCGCAAGCTTGCTTGCGGAGACACGCTGCTCTGCAAATGCGGTAATGCTGCAA CGAATTTCTTTACAGTGAAA
Product: malate dehydrogenase
Products: NA
Alternate protein names: NAD-ME [H]
Number of amino acids: Translated: 563; Mature: 562
Protein sequence:
>563_residues MTKTSRPLYISYAGPSLLEMPLLNKGSAFTPQERVEFNLIGLLPQNVETIEEQVTRVYSQYKQCASDLDKHIYLRSIQDN NETLFFRLLDSHLDEMLPIIYTPTVGQACQEFSKIYRTHRGLFISYPERDRIDDILRSATKDRIKIIVVTDSERILGLGD QGIGGMGIPIGKLSLYTACGGISPAYTLPIVLDVGTNNRELLDDPMYMGWRHERVSGKEYEDFIALFIDAVQRRWPDVLL QFEDFAQSNAMPLLEKYRDELCCFNDDIQGTASVAVGTLLAACKAKNETLGQQKVVFVGAGSAGCGIAEHIIAAMRIEGL SESEARKRIFMVDRFGLLTESMDNLLDFQKRLAQKTADVSGWTAGSEAFPQLLDVVTHAGATVMIGVSGQRGLFTEQVIR ELHKHCAKPLVMPLSNPTSKVEATPEEILRWTDGNALVATGSPFAPVEINGRTVHIAQCNNSYIFPGIGLGVVACKASRI TDRMLMAASNALAECSPMVTGKGDAVLPPLKEIQQVSRKIALAVAREAQAEGLALETTEEALLEAIERNFWLPGYRAYRR RSV
Sequences:
>Translated_563_residues MTKTSRPLYISYAGPSLLEMPLLNKGSAFTPQERVEFNLIGLLPQNVETIEEQVTRVYSQYKQCASDLDKHIYLRSIQDN NETLFFRLLDSHLDEMLPIIYTPTVGQACQEFSKIYRTHRGLFISYPERDRIDDILRSATKDRIKIIVVTDSERILGLGD QGIGGMGIPIGKLSLYTACGGISPAYTLPIVLDVGTNNRELLDDPMYMGWRHERVSGKEYEDFIALFIDAVQRRWPDVLL QFEDFAQSNAMPLLEKYRDELCCFNDDIQGTASVAVGTLLAACKAKNETLGQQKVVFVGAGSAGCGIAEHIIAAMRIEGL SESEARKRIFMVDRFGLLTESMDNLLDFQKRLAQKTADVSGWTAGSEAFPQLLDVVTHAGATVMIGVSGQRGLFTEQVIR ELHKHCAKPLVMPLSNPTSKVEATPEEILRWTDGNALVATGSPFAPVEINGRTVHIAQCNNSYIFPGIGLGVVACKASRI TDRMLMAASNALAECSPMVTGKGDAVLPPLKEIQQVSRKIALAVAREAQAEGLALETTEEALLEAIERNFWLPGYRAYRR RSV >Mature_562_residues TKTSRPLYISYAGPSLLEMPLLNKGSAFTPQERVEFNLIGLLPQNVETIEEQVTRVYSQYKQCASDLDKHIYLRSIQDNN ETLFFRLLDSHLDEMLPIIYTPTVGQACQEFSKIYRTHRGLFISYPERDRIDDILRSATKDRIKIIVVTDSERILGLGDQ GIGGMGIPIGKLSLYTACGGISPAYTLPIVLDVGTNNRELLDDPMYMGWRHERVSGKEYEDFIALFIDAVQRRWPDVLLQ FEDFAQSNAMPLLEKYRDELCCFNDDIQGTASVAVGTLLAACKAKNETLGQQKVVFVGAGSAGCGIAEHIIAAMRIEGLS ESEARKRIFMVDRFGLLTESMDNLLDFQKRLAQKTADVSGWTAGSEAFPQLLDVVTHAGATVMIGVSGQRGLFTEQVIRE LHKHCAKPLVMPLSNPTSKVEATPEEILRWTDGNALVATGSPFAPVEINGRTVHIAQCNNSYIFPGIGLGVVACKASRIT DRMLMAASNALAECSPMVTGKGDAVLPPLKEIQQVSRKIALAVAREAQAEGLALETTEEALLEAIERNFWLPGYRAYRRR SV
Specific function: Unknown
COG id: COG0281
COG function: function code C; Malic enzyme
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the malic enzymes family [H]
Homologues:
Organism=Homo sapiens, GI4505143, Length=538, Percent_Identity=44.0520446096654, Blast_Score=454, Evalue=1e-128, Organism=Homo sapiens, GI62420882, Length=558, Percent_Identity=42.6523297491039, Blast_Score=439, Evalue=1e-123, Organism=Homo sapiens, GI62420880, Length=558, Percent_Identity=42.6523297491039, Blast_Score=439, Evalue=1e-123, Organism=Homo sapiens, GI239049447, Length=558, Percent_Identity=42.6523297491039, Blast_Score=439, Evalue=1e-123, Organism=Homo sapiens, GI4505145, Length=560, Percent_Identity=41.6071428571429, Blast_Score=411, Evalue=1e-115, Organism=Homo sapiens, GI270265879, Length=470, Percent_Identity=44.2553191489362, Blast_Score=379, Evalue=1e-105, Organism=Escherichia coli, GI87081919, Length=562, Percent_Identity=64.7686832740214, Blast_Score=746, Evalue=0.0, Organism=Caenorhabditis elegans, GI17537199, Length=526, Percent_Identity=43.9163498098859, Blast_Score=409, Evalue=1e-114, Organism=Saccharomyces cerevisiae, GI6322823, Length=560, Percent_Identity=44.2857142857143, Blast_Score=452, Evalue=1e-128, Organism=Drosophila melanogaster, GI281362672, Length=518, Percent_Identity=44.2084942084942, Blast_Score=426, Evalue=1e-119, Organism=Drosophila melanogaster, GI21356279, Length=518, Percent_Identity=44.2084942084942, Blast_Score=426, Evalue=1e-119, Organism=Drosophila melanogaster, GI281362674, Length=518, Percent_Identity=44.2084942084942, Blast_Score=426, Evalue=1e-119, Organism=Drosophila melanogaster, GI24646386, Length=514, Percent_Identity=43.1906614785992, Blast_Score=414, Evalue=1e-116, Organism=Drosophila melanogaster, GI24646388, Length=514, Percent_Identity=43.1906614785992, Blast_Score=414, Evalue=1e-116, Organism=Drosophila melanogaster, GI78707242, Length=531, Percent_Identity=37.8531073446328, Blast_Score=364, Evalue=1e-101, Organism=Drosophila melanogaster, GI78707238, Length=531, Percent_Identity=37.8531073446328, Blast_Score=364, Evalue=1e-101, Organism=Drosophila melanogaster, GI78707240, Length=515, Percent_Identity=37.8640776699029, Blast_Score=359, Evalue=4e-99, Organism=Drosophila melanogaster, GI281363505, Length=535, Percent_Identity=33.6448598130841, Blast_Score=345, Evalue=4e-95, Organism=Drosophila melanogaster, GI78707236, Length=535, Percent_Identity=33.6448598130841, Blast_Score=345, Evalue=4e-95, Organism=Drosophila melanogaster, GI78707232, Length=504, Percent_Identity=34.7222222222222, Blast_Score=345, Evalue=4e-95, Organism=Drosophila melanogaster, GI281363503, Length=533, Percent_Identity=33.3958724202627, Blast_Score=342, Evalue=5e-94, Organism=Drosophila melanogaster, GI19922384, Length=549, Percent_Identity=28.7795992714025, Blast_Score=237, Evalue=1e-62,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015884 - InterPro: IPR012301 - InterPro: IPR012302 - InterPro: IPR001891 - InterPro: IPR016040 [H]
Pfam domain/function: PF00390 malic; PF03949 Malic_M [H]
EC number: =1.1.1.38 [H]
Molecular weight: Translated: 62285; Mature: 62154
Theoretical pI: Translated: 5.56; Mature: 5.56
Prosite motif: PS00331 MALIC_ENZYMES
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKTSRPLYISYAGPSLLEMPLLNKGSAFTPQERVEFNLIGLLPQNVETIEEQVTRVYSQ CCCCCCCEEEEECCCCHHCCCCCCCCCCCCCHHHCEEEEEECCCCCHHHHHHHHHHHHHH YKQCASDLDKHIYLRSIQDNNETLFFRLLDSHLDEMLPIIYTPTVGQACQEFSKIYRTHR HHHHHHHHHHHEEEEEECCCCCEEEHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHHHHC GLFISYPERDRIDDILRSATKDRIKIIVVTDSERILGLGDQGIGGMGIPIGKLSLYTACG CEEEECCCCCHHHHHHHHCCCCCEEEEEEECCCCEEECCCCCCCCCCCCHHHHHHHHHCC GISPAYTLPIVLDVGTNNRELLDDPMYMGWRHERVSGKEYEDFIALFIDAVQRRWPDVLL CCCCCEEEEEEEEECCCCHHHHCCCHHCCCEECCCCCCHHHHHHHHHHHHHHHHCHHHHH QFEDFAQSNAMPLLEKYRDELCCFNDDIQGTASVAVGTLLAACKAKNETLGQQKVVFVGA HHHHHHCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEC GSAGCGIAEHIIAAMRIEGLSESEARKRIFMVDRFGLLTESMDNLLDFQKRLAQKTADVS CCCCCCHHHHHHHHHHHCCCCHHHHHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCC GWTAGSEAFPQLLDVVTHAGATVMIGVSGQRGLFTEQVIRELHKHCAKPLVMPLSNPTSK CCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCC VEATPEEILRWTDGNALVATGSPFAPVEINGRTVHIAQCNNSYIFPGIGLGVVACKASRI CCCCHHHHHEECCCCEEEECCCCCCCEEECCCEEEEEECCCCEECCCCCHHHHHHHHHHH TDRMLMAASNALAECSPMVTGKGDAVLPPLKEIQQVSRKIALAVAREAQAEGLALETTEE HHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECHHH ALLEAIERNFWLPGYRAYRRRSV HHHHHHHHCCCCCCHHHHHHCCC >Mature Secondary Structure TKTSRPLYISYAGPSLLEMPLLNKGSAFTPQERVEFNLIGLLPQNVETIEEQVTRVYSQ CCCCCCEEEEECCCCHHCCCCCCCCCCCCCHHHCEEEEEECCCCCHHHHHHHHHHHHHH YKQCASDLDKHIYLRSIQDNNETLFFRLLDSHLDEMLPIIYTPTVGQACQEFSKIYRTHR HHHHHHHHHHHEEEEEECCCCCEEEHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHHHHC GLFISYPERDRIDDILRSATKDRIKIIVVTDSERILGLGDQGIGGMGIPIGKLSLYTACG CEEEECCCCCHHHHHHHHCCCCCEEEEEEECCCCEEECCCCCCCCCCCCHHHHHHHHHCC GISPAYTLPIVLDVGTNNRELLDDPMYMGWRHERVSGKEYEDFIALFIDAVQRRWPDVLL CCCCCEEEEEEEEECCCCHHHHCCCHHCCCEECCCCCCHHHHHHHHHHHHHHHHCHHHHH QFEDFAQSNAMPLLEKYRDELCCFNDDIQGTASVAVGTLLAACKAKNETLGQQKVVFVGA HHHHHHCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEC GSAGCGIAEHIIAAMRIEGLSESEARKRIFMVDRFGLLTESMDNLLDFQKRLAQKTADVS CCCCCCHHHHHHHHHHHCCCCHHHHHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCC GWTAGSEAFPQLLDVVTHAGATVMIGVSGQRGLFTEQVIRELHKHCAKPLVMPLSNPTSK CCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCC VEATPEEILRWTDGNALVATGSPFAPVEINGRTVHIAQCNNSYIFPGIGLGVVACKASRI CCCCHHHHHEECCCCEEEECCCCCCCEEECCCEEEEEECCCCEECCCCCHHHHHHHHHHH TDRMLMAASNALAECSPMVTGKGDAVLPPLKEIQQVSRKIALAVAREAQAEGLALETTEE HHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECHHH ALLEAIERNFWLPGYRAYRRRSV HHHHHHHHCCCCCCHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA