| Definition | Shigella flexneri 2a str. 2457T, complete genome. |
|---|---|
| Accession | NC_004741 |
| Length | 4,599,354 |
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The map label for this gene is yieN
Identifier: 229089133
GI number: 229089133
Start: 3834933
End: 3836429
Strand: Direct
Name: yieN
Synonym: S3942
Alternate gene names: 229089133
Gene position: 3834933-3836429 (Clockwise)
Preceding gene: 30064940
Following gene: 161486402
Centisome position: 83.38
GC content: 49.3
Gene sequence:
>1497_bases ATGGCTCACCCTCATTTATTAGCGGAAAGAATTTCCCGCCTGAGCAGTTCGTTGGAAAAGGGGCTTTATGAACGTAGCCA CGCCATCCGCTTGTGTTTATTAGCGGCATTAAGTGGTGAAAGTGTGTTCCTCCTTGGCCCGCCAGGTATTGCCAAAAGTT TGATCGCCCGGCGCTTAAAATTCGCCTTTCAGAATGCCCGCGCGTTTGAATATCTGATGACCCGCTTCTCCACGCCGGAA GAAGTTTTTGGTCCCCTTTCTATTCAGGCGCTAAAAGATGAAGGGCGCTATGAACGTTTAACCAGCGGTTACCTGCCGGA AGCAGAAATCGTCTTTCTGGATGAGATCTGGAAAGCGGGCCCGGCAATTCTTAATACCTTGCTCACCGCCATTAACGAGC GCCAGTTCCGCAACGGTGCACACGTAGAAAAAATCCCGATGCGTCTACTGGTGGCGGCCTCCAACGAGCTGCCGGAAGCA GACAGCAGTCTGGAAGCGTTATATGACCGCATGCTGATTCGTCTATGGTTAGATAAAGTGCAAGATAAAGCGAATTTCCG CTCCATGCTGACCAGTCAACAGGATGAAAACGACAATCCGGTTCCTGATGCCTTGCAGGTCACAGATGAAGAATATGAAC GCTGGCAGAAAGAGATTGGTGAAATTACGCTGCCCGATCATGTATTTGAGCTGATTTTTATTCTGCGCCAGCAACTGGAT AAATTACCGGATGCGCCTTATGTCTCGGATCGTCGCTGGAAAAAAGCGATCCGCTTATTGCAGGCCAGCGCCTTTTTTAG CGGTCGCAGTGCTGTTGCCCCGGTTGATCTCATTTTGCTGAAAGATTGCCTGTGGTATGACGCGCAAAGCCTGAATTTGA TACAACAACAAATTGATGTATTGATGACCGGTCATGCCTGGCAACAGCAAGGGATGTTGACCCGCCTGGGCGCGATTGTG CAACGTCACCTGCAACTCCAGCAGCAACAAAGCGATAAAACAGCCTTAACGTTAATTCGTCTGGGCGGCATTTTCAGCCG TCGTCAGCAGTATCAACTTCCTGTTAACGTTACTGCTTCCACTCTGACTCTGCTGCTGCAAAAACCGTTAAAACTGCATG ATATGGAAGTGGTTCATATCTCCTTTGAGCGTAGCGCGCTGGAACAGTGGCTGAGTAAAGGTGGTGAAATTCGCGGCAAA CTGAACGGTATCGGCTTTGCCCAGAAACTGAATCTGGAAGTTGATAGCACCCAACATCTTGTTGTACGCGATGTAAGTTT ACAAGGCAGTACGCTGGCACTTCCCGGTTCATCGGCTGAAGGTCTGCCAGGTGAAATAAAACAACAACTGGAAGAGCTTG AAAGCGACTGGCGTAAGCAACACGCTTTATTCAGCGAACAGCAAAAATGTCTGTTTATCCCTGGCGACTGGTTAGGTCGC ATTGAAGACAGCCTACAGGATGTCGGTGCACAGATTCGTCAGGCACAACAATGCTAA
Upstream 100 bases:
>100_bases GATCGGTATTACCCCCCTTTGAGACTATTTTAGTCACCAGCAAGAAACGTCTATACTCGCAATTTACGCAGAACTTTTGA CGAAAGGACGCCACTTCATT
Downstream 100 bases:
>100_bases CGCTGGATACGCTTAATGTGATGCTGGCCGTCAGCGAAGAGGGATTGATCGAAGAGATGATCATCGCACTGCTGGCCTCA CCGCAGCTGGCGGTCTTCTT
Product: regulatory ATPase RavA
Products: NA
Alternate protein names: Regulatory ATPase variant A [H]
Number of amino acids: Translated: 498; Mature: 497
Protein sequence:
>498_residues MAHPHLLAERISRLSSSLEKGLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPE EVFGPLSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEA DSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFILRQQLD KLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLILLKDCLWYDAQSLNLIQQQIDVLMTGHAWQQQGMLTRLGAIV QRHLQLQQQQSDKTALTLIRLGGIFSRRQQYQLPVNVTASTLTLLLQKPLKLHDMEVVHISFERSALEQWLSKGGEIRGK LNGIGFAQKLNLEVDSTQHLVVRDVSLQGSTLALPGSSAEGLPGEIKQQLEELESDWRKQHALFSEQQKCLFIPGDWLGR IEDSLQDVGAQIRQAQQC
Sequences:
>Translated_498_residues MAHPHLLAERISRLSSSLEKGLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPE EVFGPLSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEA DSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFILRQQLD KLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLILLKDCLWYDAQSLNLIQQQIDVLMTGHAWQQQGMLTRLGAIV QRHLQLQQQQSDKTALTLIRLGGIFSRRQQYQLPVNVTASTLTLLLQKPLKLHDMEVVHISFERSALEQWLSKGGEIRGK LNGIGFAQKLNLEVDSTQHLVVRDVSLQGSTLALPGSSAEGLPGEIKQQLEELESDWRKQHALFSEQQKCLFIPGDWLGR IEDSLQDVGAQIRQAQQC >Mature_497_residues AHPHLLAERISRLSSSLEKGLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEE VFGPLSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEAD SSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFILRQQLDK LPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLILLKDCLWYDAQSLNLIQQQIDVLMTGHAWQQQGMLTRLGAIVQ RHLQLQQQQSDKTALTLIRLGGIFSRRQQYQLPVNVTASTLTLLLQKPLKLHDMEVVHISFERSALEQWLSKGGEIRGKL NGIGFAQKLNLEVDSTQHLVVRDVSLQGSTLALPGSSAEGLPGEIKQQLEELESDWRKQHALFSEQQKCLFIPGDWLGRI EDSLQDVGAQIRQAQQC
Specific function: Functions as an ATPase. May play a role in metal insertion (metal-chelatase) or as a chaperone [H]
COG id: COG0714
COG function: function code R; MoxR-like ATPases
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ravA family [H]
Homologues:
Organism=Escherichia coli, GI87082326, Length=498, Percent_Identity=99.1967871485944, Blast_Score=1005, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR011704 - InterPro: IPR022547 [H]
Pfam domain/function: PF07728 AAA_5; PF12592 DUF3763 [H]
EC number: NA
Molecular weight: Translated: 56460; Mature: 56328
Theoretical pI: Translated: 6.31; Mature: 6.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAHPHLLAERISRLSSSLEKGLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLK CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHH FAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAG HHHHHHHHHHHHHHHCCCHHHHHCCCHHEEHHCCCHHHHHHCCCCCCCCEEEHHHHHCCC PAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYDRMLIRLWLDKV HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHH QDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFILRQQLD HHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH KLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLILLKDCLWYDAQSLNLIQQQIDV HCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHH LMTGHAWQQQGMLTRLGAIVQRHLQLQQQQSDKTALTLIRLGGIFSRRQQYQLPVNVTAS HHCCCHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHHH TLTLLLQKPLKLHDMEVVHISFERSALEQWLSKGGEIRGKLNGIGFAQKLNLEVDSTQHL HHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHHCCCCEEEECCCCCCCEEECEEECCCCEE VVRDVSLQGSTLALPGSSAEGLPGEIKQQLEELESDWRKQHALFSEQQKCLFIPGDWLGR EEEEEECCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHH IEDSLQDVGAQIRQAQQC HHHHHHHHHHHHHHHCCC >Mature Secondary Structure AHPHLLAERISRLSSSLEKGLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLK CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHH FAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAG HHHHHHHHHHHHHHHCCCHHHHHCCCHHEEHHCCCHHHHHHCCCCCCCCEEEHHHHHCCC PAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYDRMLIRLWLDKV HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHH QDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFILRQQLD HHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH KLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLILLKDCLWYDAQSLNLIQQQIDV HCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHH LMTGHAWQQQGMLTRLGAIVQRHLQLQQQQSDKTALTLIRLGGIFSRRQQYQLPVNVTAS HHCCCHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHHH TLTLLLQKPLKLHDMEVVHISFERSALEQWLSKGGEIRGKLNGIGFAQKLNLEVDSTQHL HHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHHCCCCEEEECCCCCCCEEECEEECCCCEE VVRDVSLQGSTLALPGSSAEGLPGEIKQQLEELESDWRKQHALFSEQQKCLFIPGDWLGR EEEEEECCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHH IEDSLQDVGAQIRQAQQC HHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA