| Definition | Shigella flexneri 2a str. 2457T, complete genome. |
|---|---|
| Accession | NC_004741 |
| Length | 4,599,354 |
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The map label for this gene is yjjB
Identifier: 229089129
GI number: 229089129
Start: 4560074
End: 4560547
Strand: Reverse
Name: yjjB
Synonym: S4664
Alternate gene names: 229089129
Gene position: 4560547-4560074 (Counterclockwise)
Preceding gene: 30065608
Following gene: 30065603
Centisome position: 99.16
GC content: 50.84
Gene sequence:
>474_bases ATGGGTGTGATCGAATTTCTGTTAGCGTTGGCGCAGGATATGATCCTCGCCGCCATTCCTGCGGTCGGCTTTGCGATGGT GTTCAACGTTCCCGTGCGGGCGTTACGCTGGTGTGCGCTGCTTGGCTCGATAGGTCATGGTTCCCGAATGATCTTGATGA CCAGCGGGTTGAATATTGAGTGGTCAACCTTTATGGCTTCTATGCTGGTCGGTACCATTGGTATTCAATGGTCGCGCTGG TATCTGGCGCATCCGAAAGTGTTTACCGTGGCGGCCGTTATCCCTATGTTCCCGGGCATATCGGCTTATACCGCAATGAT TTCGTCGGTAAAAATCAGCCAGTTAGGTTACAGCGAACCGTTGATGATTACCCTGTTAACCAACTTTCTTACAGCTTCAT CGATTGTTGGTGCGTTATCCATCGGTCTTTCCATTCCTGGATTATGGTTGTACCGCAAGCGCCCTCGCGTATAA
Upstream 100 bases:
>100_bases ACATCAATACCGGACTGGCACGCTGGGCGATCGCCAGTCTGCTGACACTGGCTACCTGCGTCGGCGTAGTGATGGCACTG ACGATTTGGGGGCTACGCGG
Downstream 100 bases:
>100_bases AATTGCCTCGCTTAAGCACACGGATGAGAGACAGCCTCCTCTCCTCCGTGTGTTACTATAAAAGTTATCTCCCTTCTCGT TCATCGTTCCATATTTGAGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 157; Mature: 156
Protein sequence:
>157_residues MGVIEFLLALAQDMILAAIPAVGFAMVFNVPVRALRWCALLGSIGHGSRMILMTSGLNIEWSTFMASMLVGTIGIQWSRW YLAHPKVFTVAAVIPMFPGISAYTAMISSVKISQLGYSEPLMITLLTNFLTASSIVGALSIGLSIPGLWLYRKRPRV
Sequences:
>Translated_157_residues MGVIEFLLALAQDMILAAIPAVGFAMVFNVPVRALRWCALLGSIGHGSRMILMTSGLNIEWSTFMASMLVGTIGIQWSRW YLAHPKVFTVAAVIPMFPGISAYTAMISSVKISQLGYSEPLMITLLTNFLTASSIVGALSIGLSIPGLWLYRKRPRV >Mature_156_residues GVIEFLLALAQDMILAAIPAVGFAMVFNVPVRALRWCALLGSIGHGSRMILMTSGLNIEWSTFMASMLVGTIGIQWSRWY LAHPKVFTVAAVIPMFPGISAYTAMISSVKISQLGYSEPLMITLLTNFLTASSIVGALSIGLSIPGLWLYRKRPRV
Specific function: Unknown
COG id: COG3610
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0442 family [H]
Homologues:
Organism=Escherichia coli, GI145693219, Length=157, Percent_Identity=99.3630573248408, Blast_Score=310, Evalue=3e-86,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010619 - InterPro: IPR020914 [H]
Pfam domain/function: PF06738 DUF1212 [H]
EC number: NA
Molecular weight: Translated: 17063; Mature: 16932
Theoretical pI: Translated: 10.53; Mature: 10.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 6.4 %Met (Translated Protein) 7.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 5.8 %Met (Mature Protein) 6.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGVIEFLLALAQDMILAAIPAVGFAMVFNVPVRALRWCALLGSIGHGSRMILMTSGLNIE CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEE WSTFMASMLVGTIGIQWSRWYLAHPKVFTVAAVIPMFPGISAYTAMISSVKISQLGYSEP HHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCC LMITLLTNFLTASSIVGALSIGLSIPGLWLYRKRPRV HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCC >Mature Secondary Structure GVIEFLLALAQDMILAAIPAVGFAMVFNVPVRALRWCALLGSIGHGSRMILMTSGLNIE CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEE WSTFMASMLVGTIGIQWSRWYLAHPKVFTVAAVIPMFPGISAYTAMISSVKISQLGYSEP HHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCC LMITLLTNFLTASSIVGALSIGLSIPGLWLYRKRPRV HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA