| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is 229027857
Identifier: 229027857
GI number: 229027857
Start: 2002948
End: 2004156
Strand: Direct
Name: 229027857
Synonym: CPE1726
Alternate gene names: NA
Gene position: 2002948-2004156 (Clockwise)
Preceding gene: 18310687
Following gene: 18310709
Centisome position: 66.07
GC content: 27.21
Gene sequence:
>1209_bases ATGAATATAACTGGCATAATAACTGAATATAACCCTTTTCATCTAGGTCATGAACTTCATCTAAAAAGTTCAAAAGAGAT TACAAATTGCGATGGAGTTATTTGTGTTATGAGTGGAAACTTTGTGCAAAGAGGTTTGCCTGCTTTAACAGACAAATGGA CTAGAACAAAAATGGCCTTAGAAGCTGGAGTTGATTTAGTTGTAGAACTTCCAACCCTTTTTGCAACTTCTTCAGCAGAA TTTTTTGCCTTTGGTGCAGTATCTTTGCTTAATTCTTTAAATGTAGTTAATAATATTTGTTTTGGGTCAGAATGTGGAGA TATAGATTTAATTAAAAAACTTAGTGAAATTATTATCAATGAACCCCCTCTATTTAAAGAATATTTAAAGGATTATTTAA AGGAAGGACTTCCCTTTCCTAAAGCTAGAAGTGAAGCTTTAATGAAGTACTTAGATGATAATAATTATAAAATTGATTTT TCATACTTAGAAAAAGTTCTAAACTCTTCTAATAATATATTAGCCATTGAATATTGCAAAAGCCTTTATAAGCTTCAAAG TTCTATAAAACCTTTTACTATACAAAGATTAGGAGCAGATTACAATGATGAAGAACTTTCAAAAAATGAAATAGCTTCTG CTTCTGCCATAAGAAAAAGTATTTATACTTCAAATATGGAAGAAAGTCTTGATTTTATGCCTGAGTATAGCTATAACTTA TTAAAAAATACTTCTTTTAGTGATTTAGATAAAATGTTTGACTTAGTAAAATACGCTATAGTAAGCAATCCTAATGTATT AAAAGAAATACCAGAGGCTTCTGAAGGCATAGATAATAAGATAATTCAAAACATAGGAAAAGCTAATTCCTTAGATGAAT TAATAAATCTATGTAAAAGTAAGCGCTATTCATACACTAGATTAAATAGAATTTTATGTCACGTACTATTAAATGTAAAT AAAGATCTTCTTTCTCTTAGAAAATCTTCTCCTAATTATGTAAGAATCTTAGGATTTAATAATAAAGGAAGGGAAATTTT AAAAGAGATTAAGAAAAATTCTGAAATAAATATCGTTAATAAATTATCAAAAGCTAAAGCAGATCCTTTGTTAGAATTTG ACATAAAAGCCACTAATATTTATAGCTTTCTAAATCCATCAGTTAAAATTAACAGTGATTATTTAATTAGTCCTATTATT TTTAGATAA
Upstream 100 bases:
>100_bases TTTAAAATTATCTGAATTTTCTAATAAATATATACACTTTATTATTTTTATATATTAGGTTATTATAATTTTATCAAAAT AGGAAAAAGTGGTGATTTAA
Downstream 100 bases:
>100_bases CAATAATATTATTATATTTACTTAAATATAAATACTATATATGATTTCGTAAAAGGAGGAAACCATGTATAGTATTTTAT TTTTACTTATAATAATACTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 402; Mature: 402
Protein sequence:
>402_residues MNITGIITEYNPFHLGHELHLKSSKEITNCDGVICVMSGNFVQRGLPALTDKWTRTKMALEAGVDLVVELPTLFATSSAE FFAFGAVSLLNSLNVVNNICFGSECGDIDLIKKLSEIIINEPPLFKEYLKDYLKEGLPFPKARSEALMKYLDDNNYKIDF SYLEKVLNSSNNILAIEYCKSLYKLQSSIKPFTIQRLGADYNDEELSKNEIASASAIRKSIYTSNMEESLDFMPEYSYNL LKNTSFSDLDKMFDLVKYAIVSNPNVLKEIPEASEGIDNKIIQNIGKANSLDELINLCKSKRYSYTRLNRILCHVLLNVN KDLLSLRKSSPNYVRILGFNNKGREILKEIKKNSEINIVNKLSKAKADPLLEFDIKATNIYSFLNPSVKINSDYLISPII FR
Sequences:
>Translated_402_residues MNITGIITEYNPFHLGHELHLKSSKEITNCDGVICVMSGNFVQRGLPALTDKWTRTKMALEAGVDLVVELPTLFATSSAE FFAFGAVSLLNSLNVVNNICFGSECGDIDLIKKLSEIIINEPPLFKEYLKDYLKEGLPFPKARSEALMKYLDDNNYKIDF SYLEKVLNSSNNILAIEYCKSLYKLQSSIKPFTIQRLGADYNDEELSKNEIASASAIRKSIYTSNMEESLDFMPEYSYNL LKNTSFSDLDKMFDLVKYAIVSNPNVLKEIPEASEGIDNKIIQNIGKANSLDELINLCKSKRYSYTRLNRILCHVLLNVN KDLLSLRKSSPNYVRILGFNNKGREILKEIKKNSEINIVNKLSKAKADPLLEFDIKATNIYSFLNPSVKINSDYLISPII FR >Mature_402_residues MNITGIITEYNPFHLGHELHLKSSKEITNCDGVICVMSGNFVQRGLPALTDKWTRTKMALEAGVDLVVELPTLFATSSAE FFAFGAVSLLNSLNVVNNICFGSECGDIDLIKKLSEIIINEPPLFKEYLKDYLKEGLPFPKARSEALMKYLDDNNYKIDF SYLEKVLNSSNNILAIEYCKSLYKLQSSIKPFTIQRLGADYNDEELSKNEIASASAIRKSIYTSNMEESLDFMPEYSYNL LKNTSFSDLDKMFDLVKYAIVSNPNVLKEIPEASEGIDNKIIQNIGKANSLDELINLCKSKRYSYTRLNRILCHVLLNVN KDLLSLRKSSPNYVRILGFNNKGREILKEIKKNSEINIVNKLSKAKADPLLEFDIKATNIYSFLNPSVKINSDYLISPII FR
Specific function: Unknown
COG id: COG1323
COG function: function code R; Predicted nucleotidyltransferase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0348 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014729 - InterPro: IPR008513 [H]
Pfam domain/function: PF05636 DUF795 [H]
EC number: NA
Molecular weight: Translated: 45550; Mature: 45550
Theoretical pI: Translated: 7.33; Mature: 7.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNITGIITEYNPFHLGHELHLKSSKEITNCDGVICVMSGNFVQRGLPALTDKWTRTKMAL CCCEEEEECCCCEECCCEEECCCCCCCCCCCCEEEEEECCHHHHCCCHHHHHHHHHHHHH EAGVDLVVELPTLFATSSAEFFAFGAVSLLNSLNVVNNICFGSECGDIDLIKKLSEIIIN HHCCCEEEEHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCC EPPLFKEYLKDYLKEGLPFPKARSEALMKYLDDNNYKIDFSYLEKVLNSSNNILAIEYCK CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCEEEHHHHHHHHCCCCCEEEHHHHH SLYKLQSSIKPFTIQRLGADYNDEELSKNEIASASAIRKSIYTSNMEESLDFMPEYSYNL HHHHHHHCCCCEEHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHH LKNTSFSDLDKMFDLVKYAIVSNPNVLKEIPEASEGIDNKIIQNIGKANSLDELINLCKS HCCCCHHHHHHHHHHHHHHHHCCCHHHHHCCCHHCCHHHHHHHHHCCCCCHHHHHHHHHH KRYSYTRLNRILCHVLLNVNKDLLSLRKSSPNYVRILGFNNKGREILKEIKKNSEINIVN CCCHHHHHHHHHHHHHHHCCHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHCCCCCHHHH KLSKAKADPLLEFDIKATNIYSFLNPSVKINSDYLISPIIFR HHHHHCCCCCEEEECCHHHHHHHCCCCEEECCCEECCCCCCC >Mature Secondary Structure MNITGIITEYNPFHLGHELHLKSSKEITNCDGVICVMSGNFVQRGLPALTDKWTRTKMAL CCCEEEEECCCCEECCCEEECCCCCCCCCCCCEEEEEECCHHHHCCCHHHHHHHHHHHHH EAGVDLVVELPTLFATSSAEFFAFGAVSLLNSLNVVNNICFGSECGDIDLIKKLSEIIIN HHCCCEEEEHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCC EPPLFKEYLKDYLKEGLPFPKARSEALMKYLDDNNYKIDFSYLEKVLNSSNNILAIEYCK CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCEEEHHHHHHHHCCCCCEEEHHHHH SLYKLQSSIKPFTIQRLGADYNDEELSKNEIASASAIRKSIYTSNMEESLDFMPEYSYNL HHHHHHHCCCCEEHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHH LKNTSFSDLDKMFDLVKYAIVSNPNVLKEIPEASEGIDNKIIQNIGKANSLDELINLCKS HCCCCHHHHHHHHHHHHHHHHCCCHHHHHCCCHHCCHHHHHHHHHCCCCCHHHHHHHHHH KRYSYTRLNRILCHVLLNVNKDLLSLRKSSPNYVRILGFNNKGREILKEIKKNSEINIVN CCCHHHHHHHHHHHHHHHCCHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHCCCCCHHHH KLSKAKADPLLEFDIKATNIYSFLNPSVKINSDYLISPIIFR HHHHHCCCCCEEEECCHHHHHHHCCCCEEECCCEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA