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The map label for this gene is rps4p

Identifier: 227828305

GI number: 227828305

Start: 1878969

End: 1879514

Strand: Direct

Name: rps4p

Synonym: M1425_2046

Alternate gene names: 227828305

Gene position: 1878969-1879514 (Clockwise)

Preceding gene: 227828304

Following gene: 227828306

Centisome position: 72.02

GC content: 37.91

Gene sequence:

>546_bases
ATGGGAGATCCTAAAAAAAGTAGGAAAAAATGGGAAAGTCCAGGTCATCCATGGATAAAAGAAAGAATAGGTTATGAGCA
AGAACTGTTAGGAAAATACGGTCTAAGAAACAAAAGGGAAATCTGGATAGCACAGTCAATAATTAGAAAGTTTAGACACC
AAGCAAGATCATTATTAGCATTGCCACCTGCAGAAAGGGCCGTCAGGGAGAAACAATTAGTCGGGAAGTTATTGAAGATG
GGTTTGTTAAAGAGGGAAACTGCAACTGTAGATGATATTCTAAGTTTAACTGAGCAAGATCTATTGGAGAGAAGATTGCA
AACTATAGTGTATAAGAAAGGATTAGCAAATACAACATATCAGGCTAGGCAATTAATAATTCATGGGCACATTGCGGTCA
ATGGTAAAAGAGTTACGTCTCCAGGTTATATTGTTAATGTAGATGAGGAAAATCTAATCGATTATTACGTTACTTCCTCA
TTTAAATCAAGACCACCAGTTATGGCACAACAGGAAGGAGGTGAAGCAGGTGTCAAGCAGGCGTGA

Upstream 100 bases:

>100_bases
ACTGGTATGACTATAGGTGTAGCTAGAAAGAAAGCCGCACAACCCCAAGCTCAACAATCTTCTTCCCAACAACAACAGAA
ATCCTCTTAAGGTGATCTAG

Downstream 100 bases:

>100_bases
AATTAGATGGGGAATAGCTCATATTTACGCATCACAAAATAACACTCTAATAACTATAAGTGATCTTACTGGCGCGGAAA
TCATCTCCAGAGCTAGTGGA

Product: 30S ribosomal protein S4P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 180

Protein sequence:

>181_residues
MGDPKKSRKKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAERAVREKQLVGKLLKM
GLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSS
FKSRPPVMAQQEGGEAGVKQA

Sequences:

>Translated_181_residues
MGDPKKSRKKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAERAVREKQLVGKLLKM
GLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSS
FKSRPPVMAQQEGGEAGVKQA
>Mature_180_residues
GDPKKSRKKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAERAVREKQLVGKLLKMG
LLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSF
KSRPPVMAQQEGGEAGVKQA

Specific function: With S5 and S12 plays an important role in translational accuracy

COG id: COG0522

COG function: function code J; Ribosomal protein S4 and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain

Homologues:

Organism=Homo sapiens, GI14141193, Length=157, Percent_Identity=39.4904458598726, Blast_Score=109, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17535707, Length=152, Percent_Identity=39.4736842105263, Blast_Score=107, Evalue=3e-24,
Organism=Saccharomyces cerevisiae, GI6319666, Length=174, Percent_Identity=36.7816091954023, Blast_Score=110, Evalue=2e-25,
Organism=Saccharomyces cerevisiae, GI6325176, Length=174, Percent_Identity=36.2068965517241, Blast_Score=108, Evalue=4e-25,
Organism=Drosophila melanogaster, GI24661711, Length=160, Percent_Identity=37.5, Blast_Score=108, Evalue=2e-24,
Organism=Drosophila melanogaster, GI24661707, Length=160, Percent_Identity=37.5, Blast_Score=108, Evalue=2e-24,
Organism=Drosophila melanogaster, GI24661715, Length=130, Percent_Identity=39.2307692307692, Blast_Score=89, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RS4_SULIA (C3N052)

Other databases:

- EMBL:   CP001401
- RefSeq:   YP_002844037.1
- GeneID:   7811943
- GenomeReviews:   CP001401_GR
- KEGG:   sim:M1627_2126
- OMA:   RNKRELW
- ProtClustDB:   PRK04051
- GO:   GO:0006412
- HAMAP:   MF_01306_A
- InterPro:   IPR022801
- InterPro:   IPR005710
- InterPro:   IPR022802
- InterPro:   IPR018079
- InterPro:   IPR002942
- PANTHER:   PTHR11831
- SMART:   SM00363
- TIGRFAMs:   TIGR01018

Pfam domain/function: PF01479 S4

EC number: NA

Molecular weight: Translated: 20688; Mature: 20557

Theoretical pI: Translated: 10.51; Mature: 10.51

Prosite motif: PS00632 RIBOSOMAL_S4; PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGDPKKSRKKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLA
CCCCCCHHHHCCCCCCCHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHC
LPPAERAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
QARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPPVMAQQEGGEAGVKQ
HHHHHEEECEEEECCEEECCCCEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
A
C
>Mature Secondary Structure 
GDPKKSRKKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLA
CCCCCHHHHCCCCCCCHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHC
LPPAERAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
QARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPPVMAQQEGGEAGVKQ
HHHHHEEECEEEECCEEECCCCEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
A
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA