| Definition | Sulfolobus islandicus M.14.25 chromosome, complete genome. |
|---|---|
| Accession | NC_012588 |
| Length | 2,608,832 |
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The map label for this gene is dpo3 [H]
Identifier: 227828299
GI number: 227828299
Start: 1871964
End: 1874255
Strand: Direct
Name: dpo3 [H]
Synonym: M1425_2040
Alternate gene names: 227828299
Gene position: 1871964-1874255 (Clockwise)
Preceding gene: 227828298
Following gene: 227828303
Centisome position: 71.75
GC content: 32.59
Gene sequence:
>2292_bases ATGATTAAGGATTTCTTTATATTAGACTTCTCTTATGAAATCAAAGATAACATTCCACTAATTTACATTTGGAGCATTGA TGATGAAGGTAACAGTTGCGTAGTAGTAGAGAGAAATTTTAAACCATATTTTTACCTCGTATATGAGGGTAATGGGGATG AAATAATTGAAAACATAAGAAAGAATTGTGAGGTTCTCCTAATTACTAAAGTTAAAAGGAAATACTTAGGTAATGTTGTA GATGCTCTACTTGTTCAAACTTCCACACCTACTCAAATTAAGAGGTGCAGAGAAAAGATCAGTAGGATAAATGGTATAAA AAGTATTTTCGATGCGGACATAAGGTTTACTATGAGATATTCAATAGATTTCGATCTAAGACCATTTACTTGGTTTAAGG CTGAAGTAAGTGAGGTAAAGCTGGAGGGTTTTCGCGCAAAAAAAGTATATATTTTAGATAAAATTCTTTCGCACTATGAG GGTAAGATACCAGAATTAAGGGCTATTGGGATCGATTTTCAGATCTATAGTAAATATGGATCCTTGAACCCTAGAAAAGA TCCAATAGTTGTTTTGAGCTTGTGGAGCAAGGAAGGTAGCATGCAGTTTAGTTTAGACGAAAGCATGGATGATCTTAAAA TTATAAGGAAATTCGTTGACTACATATTGAATTATGACCCCGATATAATATATGTCTTTGATGTAGACGTCTTTCATTGG AAATATATTACAGAAAGAGCCAATTCGTTAGGAGTGAAAATAGATATAGGAAGGAAGATAGGCTCTGAAGTGAGTCAAGG TACCTATGGGCACTACTCGATTTCAGGGAGACTTAACGTAGATTTAGTTGGTCTACTAATGAATGAGAGATTAACTGGTC ATGTAGATTTGATTGAAGTAGCGAATTATTTAGGTATATCTCCTAGGCGTGACTCCTTAAATTGGTATGAAATTTCAAGA TATTGGGATGACGAGAAGAATAGAGATCTAGTCAAACAATATAGTTTAGAAAATGCTAAATCCATATATCTATTAGGCAA CTTTCTATTATCTCCTTATAGTGAACTGGTTAAGATAACTGGTCTACCTTTAGATAAATTATCAGTAGCTAGTTGGGGAA ATAGGATCGAGGCTTCACTAATAAGGACCGCTGCAAAATCTGAGGAATTAATCCCAATTCGAATGGATAATCCTAATCGT TCTTCAAAAATAAAGAAGACCGTTATTGAACCAAAGATTGGTATCTATAGCGATGCTTATGTTCTTGATATATCATCAGT TTATCTATCAGTAATAAGGAAATTCAATATAGGTCCAGATACTCTAGTCAAAGGGCAGTGCGATGATTGTTATGTGTCCA CAATCTCTAATTACAAATTTAAGAGAGAACCGTCAAGTCTTTATAAAACATTTCTGGAAGAATTAAGTAATATTCAAGAT ATTAGAAAATCAGAGGTAATTGAAGAATTAATGTCATCATTTTATGATTATATTCATTGGATAAATTCAAGATGGTACTC AAGAGAGATTGCAAGTGCGGTAGACGAGTTAAGTTATGAAATAGTTAAGTTGGTTATAGATCTAATTAAAAACTCAGGTT TCGAAGTGATTTTAGCTAATGACCTTTTAGTATTTGTGAAAGGAGGATCTGGAGATAAACTGAATGAATTAATATTTAAG ATAAATAGCCTATACGATCTTAACCTTAAGGTAAGGAAGATCTACAGATCATTATTAATCTTAGGTAATGATAGGTATGC AGGGTTATTAGAAGGAGATAAGATAGATATTGCAAGAATAGGTAAAGAGGATATGGATCTTTGTGAATTGGTTAGGAATG TAAAAAGAAAAGTTGTAGAAGAAATATTAATTAGTAAAGATGTTAAGAAAGCAGTAAAGTTAGTTAAGTCTGCTGTAATC AAGTTGAGGAGAGGGGAATTTAATATTGGGGAATTAATAACTTGGGTTCATATAGAAAAAGATCTTAGCGAGTACGATAA ACAACTAGCTTTTGTAGTTGCTGCAAGAAAAGCTATTCAATCTGGTTATTTAATATCTAAAGATTCAAGAATAGGTTATC TTATAGTAAAGGGTCATGGTAGTGTTCATGATCGTGCAGAACCTTTTTTCTTTGTCAAGGAGAAAAACAGAATAGATATA GAATATTACGTTGATCAACTACTCAGAGAATCTCTAAAGGTACTCACACCTTTAGGAGTAAGTGAGGAGAGTTTGAAAAA AACTAATATAACTGATATACTAGATATGTTCGGGGCTTCTAAGAAGAAATAA
Upstream 100 bases:
>100_bases GCACGCGTTTGTGATGATAAAGAATTTATACTATAAATTTTTAGATTAATTGTTAGAAACTTTGAATAAATTAAAAAGCC AGTCATTTGGTTAGTAATAT
Downstream 100 bases:
>100_bases TGTCAGTAAATGTTAATATGTCGACGTTTTGTGGTCTCTTGTTTATTCCACCTATTCTAGCTCCTATTATCATCTTAATA TTCTTTTGAGAGGCTAGATC
Product: DNA polymerase B exonuclease
Products: NA
Alternate protein names: DNA polymerase B3; DNA polymerase III [H]
Number of amino acids: Translated: 763; Mature: 763
Protein sequence:
>763_residues MIKDFFILDFSYEIKDNIPLIYIWSIDDEGNSCVVVERNFKPYFYLVYEGNGDEIIENIRKNCEVLLITKVKRKYLGNVV DALLVQTSTPTQIKRCREKISRINGIKSIFDADIRFTMRYSIDFDLRPFTWFKAEVSEVKLEGFRAKKVYILDKILSHYE GKIPELRAIGIDFQIYSKYGSLNPRKDPIVVLSLWSKEGSMQFSLDESMDDLKIIRKFVDYILNYDPDIIYVFDVDVFHW KYITERANSLGVKIDIGRKIGSEVSQGTYGHYSISGRLNVDLVGLLMNERLTGHVDLIEVANYLGISPRRDSLNWYEISR YWDDEKNRDLVKQYSLENAKSIYLLGNFLLSPYSELVKITGLPLDKLSVASWGNRIEASLIRTAAKSEELIPIRMDNPNR SSKIKKTVIEPKIGIYSDAYVLDISSVYLSVIRKFNIGPDTLVKGQCDDCYVSTISNYKFKREPSSLYKTFLEELSNIQD IRKSEVIEELMSSFYDYIHWINSRWYSREIASAVDELSYEIVKLVIDLIKNSGFEVILANDLLVFVKGGSGDKLNELIFK INSLYDLNLKVRKIYRSLLILGNDRYAGLLEGDKIDIARIGKEDMDLCELVRNVKRKVVEEILISKDVKKAVKLVKSAVI KLRRGEFNIGELITWVHIEKDLSEYDKQLAFVVAARKAIQSGYLISKDSRIGYLIVKGHGSVHDRAEPFFFVKEKNRIDI EYYVDQLLRESLKVLTPLGVSEESLKKTNITDILDMFGASKKK
Sequences:
>Translated_763_residues MIKDFFILDFSYEIKDNIPLIYIWSIDDEGNSCVVVERNFKPYFYLVYEGNGDEIIENIRKNCEVLLITKVKRKYLGNVV DALLVQTSTPTQIKRCREKISRINGIKSIFDADIRFTMRYSIDFDLRPFTWFKAEVSEVKLEGFRAKKVYILDKILSHYE GKIPELRAIGIDFQIYSKYGSLNPRKDPIVVLSLWSKEGSMQFSLDESMDDLKIIRKFVDYILNYDPDIIYVFDVDVFHW KYITERANSLGVKIDIGRKIGSEVSQGTYGHYSISGRLNVDLVGLLMNERLTGHVDLIEVANYLGISPRRDSLNWYEISR YWDDEKNRDLVKQYSLENAKSIYLLGNFLLSPYSELVKITGLPLDKLSVASWGNRIEASLIRTAAKSEELIPIRMDNPNR SSKIKKTVIEPKIGIYSDAYVLDISSVYLSVIRKFNIGPDTLVKGQCDDCYVSTISNYKFKREPSSLYKTFLEELSNIQD IRKSEVIEELMSSFYDYIHWINSRWYSREIASAVDELSYEIVKLVIDLIKNSGFEVILANDLLVFVKGGSGDKLNELIFK INSLYDLNLKVRKIYRSLLILGNDRYAGLLEGDKIDIARIGKEDMDLCELVRNVKRKVVEEILISKDVKKAVKLVKSAVI KLRRGEFNIGELITWVHIEKDLSEYDKQLAFVVAARKAIQSGYLISKDSRIGYLIVKGHGSVHDRAEPFFFVKEKNRIDI EYYVDQLLRESLKVLTPLGVSEESLKKTNITDILDMFGASKKK >Mature_763_residues MIKDFFILDFSYEIKDNIPLIYIWSIDDEGNSCVVVERNFKPYFYLVYEGNGDEIIENIRKNCEVLLITKVKRKYLGNVV DALLVQTSTPTQIKRCREKISRINGIKSIFDADIRFTMRYSIDFDLRPFTWFKAEVSEVKLEGFRAKKVYILDKILSHYE GKIPELRAIGIDFQIYSKYGSLNPRKDPIVVLSLWSKEGSMQFSLDESMDDLKIIRKFVDYILNYDPDIIYVFDVDVFHW KYITERANSLGVKIDIGRKIGSEVSQGTYGHYSISGRLNVDLVGLLMNERLTGHVDLIEVANYLGISPRRDSLNWYEISR YWDDEKNRDLVKQYSLENAKSIYLLGNFLLSPYSELVKITGLPLDKLSVASWGNRIEASLIRTAAKSEELIPIRMDNPNR SSKIKKTVIEPKIGIYSDAYVLDISSVYLSVIRKFNIGPDTLVKGQCDDCYVSTISNYKFKREPSSLYKTFLEELSNIQD IRKSEVIEELMSSFYDYIHWINSRWYSREIASAVDELSYEIVKLVIDLIKNSGFEVILANDLLVFVKGGSGDKLNELIFK INSLYDLNLKVRKIYRSLLILGNDRYAGLLEGDKIDIARIGKEDMDLCELVRNVKRKVVEEILISKDVKKAVKLVKSAVI KLRRGEFNIGELITWVHIEKDLSEYDKQLAFVVAARKAIQSGYLISKDSRIGYLIVKGHGSVHDRAEPFFFVKEKNRIDI EYYVDQLLRESLKVLTPLGVSEESLKKTNITDILDMFGASKKK
Specific function: Thought To Be Involved In DNA Repair And/Or Mutagenesis. [C]
COG id: COG0417
COG function: function code L; DNA polymerase elongation subunit (family B)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the DNA polymerase type-B family [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6320101, Length=741, Percent_Identity=22.9419703103914, Blast_Score=102, Evalue=2e-22, Organism=Drosophila melanogaster, GI24664937, Length=877, Percent_Identity=21.4367160775371, Blast_Score=108, Evalue=1e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006172 - InterPro: IPR006133 - InterPro: IPR006134 - InterPro: IPR023211 - InterPro: IPR012337 [H]
Pfam domain/function: PF00136 DNA_pol_B; PF03104 DNA_pol_B_exo [H]
EC number: =2.7.7.7 [H]
Molecular weight: Translated: 88089; Mature: 88089
Theoretical pI: Translated: 8.23; Mature: 8.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIKDFFILDFSYEIKDNIPLIYIWSIDDEGNSCVVVERNFKPYFYLVYEGNGDEIIENIR CCCEEEEEEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEEECCCHHHHHHHH KNCEVLLITKVKRKYLGNVVDALLVQTSTPTQIKRCREKISRINGIKSIFDADIRFTMRY CCCEEEEEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE SIDFDLRPFTWFKAEVSEVKLEGFRAKKVYILDKILSHYEGKIPELRAIGIDFQIYSKYG EEEECCCCCEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEEEEECCC SLNPRKDPIVVLSLWSKEGSMQFSLDESMDDLKIIRKFVDYILNYDPDIIYVFDVDVFHW CCCCCCCCEEEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHH KYITERANSLGVKIDIGRKIGSEVSQGTYGHYSISGRLNVDLVGLLMNERLTGHVDLIEV HHHHHHHHHCCEEEEECCHHCCHHCCCCCCEEEECCEECCEEEEEECCCCCCCCCHHHHH ANYLGISPRRDSLNWYEISRYWDDEKNRDLVKQYSLENAKSIYLLGNFLLSPYSELVKIT HHHHCCCCCCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCEEEEEHHHHHCCHHHHHHHC GLPLDKLSVASWGNRIEASLIRTAAKSEELIPIRMDNPNRSSKIKKTVIEPKIGIYSDAY CCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCEE VLDISSVYLSVIRKFNIGPDTLVKGQCDDCYVSTISNYKFKREPSSLYKTFLEELSNIQD EEEHHHHHHHHHHHCCCCCCCEECCCCCCHHHHHHHCCEECCCHHHHHHHHHHHHHHHHH IRKSEVIEELMSSFYDYIHWINSRWYSREIASAVDELSYEIVKLVIDLIKNSGFEVILAN HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC DLLVFVKGGSGDKLNELIFKINSLYDLNLKVRKIYRSLLILGNDRYAGLLEGDKIDIARI CEEEEEECCCCCHHHHHHHHHHCEEECCHHHHHHHHHHEEECCCCEEEEECCCEEEHHHC GKEDMDLCELVRNVKRKVVEEILISKDVKKAVKLVKSAVIKLRRGEFNIGELITWVHIEK CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHEEEEEEEHH DLSEYDKQLAFVVAARKAIQSGYLISKDSRIGYLIVKGHGSVHDRAEPFFFVKEKNRIDI HHHHHHHHHHHHHHHHHHHHCCCEEECCCCEEEEEEECCCCCCCCCCCEEEEECCCCEEH EYYVDQLLRESLKVLTPLGVSEESLKKTNITDILDMFGASKKK HHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHHHCCCCCC >Mature Secondary Structure MIKDFFILDFSYEIKDNIPLIYIWSIDDEGNSCVVVERNFKPYFYLVYEGNGDEIIENIR CCCEEEEEEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEEECCCHHHHHHHH KNCEVLLITKVKRKYLGNVVDALLVQTSTPTQIKRCREKISRINGIKSIFDADIRFTMRY CCCEEEEEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE SIDFDLRPFTWFKAEVSEVKLEGFRAKKVYILDKILSHYEGKIPELRAIGIDFQIYSKYG EEEECCCCCEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEEEEECCC SLNPRKDPIVVLSLWSKEGSMQFSLDESMDDLKIIRKFVDYILNYDPDIIYVFDVDVFHW CCCCCCCCEEEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHH KYITERANSLGVKIDIGRKIGSEVSQGTYGHYSISGRLNVDLVGLLMNERLTGHVDLIEV HHHHHHHHHCCEEEEECCHHCCHHCCCCCCEEEECCEECCEEEEEECCCCCCCCCHHHHH ANYLGISPRRDSLNWYEISRYWDDEKNRDLVKQYSLENAKSIYLLGNFLLSPYSELVKIT HHHHCCCCCCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCEEEEEHHHHHCCHHHHHHHC GLPLDKLSVASWGNRIEASLIRTAAKSEELIPIRMDNPNRSSKIKKTVIEPKIGIYSDAY CCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCEE VLDISSVYLSVIRKFNIGPDTLVKGQCDDCYVSTISNYKFKREPSSLYKTFLEELSNIQD EEEHHHHHHHHHHHCCCCCCCEECCCCCCHHHHHHHCCEECCCHHHHHHHHHHHHHHHHH IRKSEVIEELMSSFYDYIHWINSRWYSREIASAVDELSYEIVKLVIDLIKNSGFEVILAN HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC DLLVFVKGGSGDKLNELIFKINSLYDLNLKVRKIYRSLLILGNDRYAGLLEGDKIDIARI CEEEEEECCCCCHHHHHHHHHHCEEECCHHHHHHHHHHEEECCCCEEEEECCCEEEHHHC GKEDMDLCELVRNVKRKVVEEILISKDVKKAVKLVKSAVIKLRRGEFNIGELITWVHIEK CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHEEEEEEEHH DLSEYDKQLAFVVAARKAIQSGYLISKDSRIGYLIVKGHGSVHDRAEPFFFVKEKNRIDI HHHHHHHHHHHHHHHHHHHHCCCEEECCCCEEEEEEECCCCCCCCCCCEEEEECCCCEEH EYYVDQLLRESLKVLTPLGVSEESLKKTNITDILDMFGASKKK HHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9098062 [H]