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The map label for this gene is rpoL

Identifier: 227828072

GI number: 227828072

Start: 1676468

End: 1676746

Strand: Direct

Name: rpoL

Synonym: M1425_1809

Alternate gene names: 227828072

Gene position: 1676468-1676746 (Clockwise)

Preceding gene: 227828071

Following gene: 227828073

Centisome position: 64.26

GC content: 32.62

Gene sequence:

>279_bases
GTGGAAATTAAAATACTAAAAAGTGAAAGAAATTACTTAGAATTAGAGATAGAAGGGGAAGATCATACGTTAGGTAACTT
AATTGCGGGTACCTTGAGGAAAATTAGTGGTGTAAGCTTTGCTTCATATTATCAACCGCATCCCCTAACTGATAAAATAA
TAGTTAAAATACTAACTGATGGTTCAATAGCTCCTAAAGATGCTTTACTAAAAGCTATCGAAACTGTAAGAGTAATGGCC
TCACATTATATAGACGAAATAAAGGGATTAAGTAAGTGA

Upstream 100 bases:

>100_bases
TGTGGATACTTATTGATCAAGCAAGACGAAAATAATTTAAAATGTCAGAGATGCGGAAATATTGAACAACGAAAAATAGG
ATCTTATATGGTGAAGAAAG

Downstream 100 bases:

>100_bases
AAAAGGAGACAAGGATAGCAATATTAGTTAAAGTCGATTGTTTGTATGCAATATGTATATTTAGGGGTAATTTCTTAGAA
AAGCTATTTTTAGATATAAA

Product: RNA polymerase dimerisation

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 92; Mature: 92

Protein sequence:

>92_residues
MEIKILKSERNYLELEIEGEDHTLGNLIAGTLRKISGVSFASYYQPHPLTDKIIVKILTDGSIAPKDALLKAIETVRVMA
SHYIDEIKGLSK

Sequences:

>Translated_92_residues
MEIKILKSERNYLELEIEGEDHTLGNLIAGTLRKISGVSFASYYQPHPLTDKIIVKILTDGSIAPKDALLKAIETVRVMA
SHYIDEIKGLSK
>Mature_92_residues
MEIKILKSERNYLELEIEGEDHTLGNLIAGTLRKISGVSFASYYQPHPLTDKIIVKILTDGSIAPKDALLKAIETVRVMA
SHYIDEIKGLSK

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

COG id: COG1761

COG function: function code K; DNA-directed RNA polymerase, subunit L

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the archaeal rpoL/eukaryotic RPB11/RPC19 RNA polymerase subunit family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOL_SULIA (C3MZG6)

Other databases:

- EMBL:   CP001401
- RefSeq:   YP_002843843.1
- ProteinModelPortal:   C3MZG6
- GeneID:   7812269
- GenomeReviews:   CP001401_GR
- KEGG:   sim:M1627_1927
- OMA:   EDHTFAN
- ProtClustDB:   PRK01146
- HAMAP:   MF_00261
- InterPro:   IPR011261
- InterPro:   IPR009025
- InterPro:   IPR008193
- InterPro:   IPR022905

Pfam domain/function: PF01193 RNA_pol_L; SSF55257 RNAP_RBP11-like

EC number: =2.7.7.6

Molecular weight: Translated: 10253; Mature: 10253

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS01154 RNA_POL_L_13KD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIKILKSERNYLELEIEGEDHTLGNLIAGTLRKISGVSFASYYQPHPLTDKIIVKILTD
CCEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHEEEEECC
GSIAPKDALLKAIETVRVMASHYIDEIKGLSK
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MEIKILKSERNYLELEIEGEDHTLGNLIAGTLRKISGVSFASYYQPHPLTDKIIVKILTD
CCEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHEEEEECC
GSIAPKDALLKAIETVRVMASHYIDEIKGLSK
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA