Click here to switch to the map view.

The map label for this gene is aubA

Identifier: 227827413

GI number: 227827413

Start: 1071270

End: 1072544

Strand: Direct

Name: aubA

Synonym: M1425_1132

Alternate gene names: 227827413

Gene position: 1071270-1072544 (Clockwise)

Preceding gene: 227827412

Following gene: 227827414

Centisome position: 41.06

GC content: 34.12

Gene sequence:

>1275_bases
ATGAAAGGAAGAGTTAGAATAAGGGGGATTTATGCTACAGCGTTAACGTCAATTTTTTCTTCTCTTTCATATGAAATTGT
ACAACAATCTGTGGAGATAGCTGAGCGATTTATGCGGGAAGTAAATAATTTACCAGCAGATATTACCATAAAGGATTTTG
AATATGATAGAGGCAAGATTATCGTGATGGGAAATGGAACTATTGAGGAGGACCTACATGATGTATTTAAGTACTCATTC
CACTGGAAAAGTCCTATCAAACTATACTCGGTAATAGAAGCAGACGAAAGTTGCACCTACGGTAACTTTAAAGTAGAACC
ATGCCTAGAAGAGGGAATCGTTATAAAACCGCCTTATGATGGAAAAATAGTATTAAGTGAGACTAAGGCTGTAAGTAAGT
ACGCAATGGTATGGAGAGGGAAGGGAGTAACTACTTTTTCTGAGCATATTAACAATGAGGAGGAAAGACTGAGGCTACTA
ACCTTAAGTTCACCTCTTAATAGAAAAGGATATAACGTAAAGTGGAGAAGTAATGCAAAATATGCAACACTAAATGAATT
AAAGGAAGATCTAGAGAGATTAGTATTGAGGTATGAAAATAGGGAGTTTAGAGATCAAGGAGAGGATTTCTATTTAATAA
CCCTTTCATTACCGGATAAACTGCATTTAGATGAAGTCAGAAAGAGCATAGTTAACACTGTTAAGTACCATCATATGTTA
AAGTTAAGTTATAATAGGGAAGTGGACTCCTTAGAAAAGGATAAGGAAGGTTCTCCAGTTAAATTATTAGAAGCACTAAT
TTCCGATTTCATGAAGATTGAGCACATTAAGGCTGATGGAAAGGCGATCTACCTAAGAGGTGGGAAAGTAATTGAGAAGG
AAGTTAATAATGACGGATATAGAATCACTCTTAGGCGTGAGATTAACGGTAATGGAGTTCTGGATGGTATAGGAAAAAGA
ATAGAGAATGGCGACTATGATATTGTAGAGTACAATTCTGATAAGTGGTATCAGATTCATAGGTATTATAGTGGTATAGA
TAACTCGTTAAAGGGAATCTATATTAATATATCAACACCACCAGAATTACTTAAAGGAAAAATAAGGTACTTAGATTTGG
AAATTGATATTGCAATTAGAGATTCAGAAATAATAGTATTGGATGAGGATGAGCTAAACAAAAAAAGCATTTACATGCAC
TCTTCACTAGTAAATAAAGCTAAGGAAGTTGCTAATTATTTAATAGATTGTATTCAACAAAATAAGCTGATTTAA

Upstream 100 bases:

>100_bases
ATAACTACCAAGGGAATTGCAAGAATAGATAACAACGTTGAACTAACATATGTCAAGAAAGGAGGAATATTAAATTATGT
GCTCGAGAAATTCTTAGAAA

Downstream 100 bases:

>100_bases
TAGAATTATAGTCAAGATATTCTATAAAGTAAATGTCGTCATTGATTAAAAACTATTCAATCTTCTAGGAAAATATATAA
TGATAAATTAGCTTTTTGTT

Product: hypothetical protein

Products: NA

Alternate protein names: AU-binding protein

Number of amino acids: Translated: 424; Mature: 424

Protein sequence:

>424_residues
MKGRVRIRGIYATALTSIFSSLSYEIVQQSVEIAERFMREVNNLPADITIKDFEYDRGKIIVMGNGTIEEDLHDVFKYSF
HWKSPIKLYSVIEADESCTYGNFKVEPCLEEGIVIKPPYDGKIVLSETKAVSKYAMVWRGKGVTTFSEHINNEEERLRLL
TLSSPLNRKGYNVKWRSNAKYATLNELKEDLERLVLRYENREFRDQGEDFYLITLSLPDKLHLDEVRKSIVNTVKYHHML
KLSYNREVDSLEKDKEGSPVKLLEALISDFMKIEHIKADGKAIYLRGGKVIEKEVNNDGYRITLRREINGNGVLDGIGKR
IENGDYDIVEYNSDKWYQIHRYYSGIDNSLKGIYINISTPPELLKGKIRYLDLEIDIAIRDSEIIVLDEDELNKKSIYMH
SSLVNKAKEVANYLIDCIQQNKLI

Sequences:

>Translated_424_residues
MKGRVRIRGIYATALTSIFSSLSYEIVQQSVEIAERFMREVNNLPADITIKDFEYDRGKIIVMGNGTIEEDLHDVFKYSF
HWKSPIKLYSVIEADESCTYGNFKVEPCLEEGIVIKPPYDGKIVLSETKAVSKYAMVWRGKGVTTFSEHINNEEERLRLL
TLSSPLNRKGYNVKWRSNAKYATLNELKEDLERLVLRYENREFRDQGEDFYLITLSLPDKLHLDEVRKSIVNTVKYHHML
KLSYNREVDSLEKDKEGSPVKLLEALISDFMKIEHIKADGKAIYLRGGKVIEKEVNNDGYRITLRREINGNGVLDGIGKR
IENGDYDIVEYNSDKWYQIHRYYSGIDNSLKGIYINISTPPELLKGKIRYLDLEIDIAIRDSEIIVLDEDELNKKSIYMH
SSLVNKAKEVANYLIDCIQQNKLI
>Mature_424_residues
MKGRVRIRGIYATALTSIFSSLSYEIVQQSVEIAERFMREVNNLPADITIKDFEYDRGKIIVMGNGTIEEDLHDVFKYSF
HWKSPIKLYSVIEADESCTYGNFKVEPCLEEGIVIKPPYDGKIVLSETKAVSKYAMVWRGKGVTTFSEHINNEEERLRLL
TLSSPLNRKGYNVKWRSNAKYATLNELKEDLERLVLRYENREFRDQGEDFYLITLSLPDKLHLDEVRKSIVNTVKYHHML
KLSYNREVDSLEKDKEGSPVKLLEALISDFMKIEHIKADGKAIYLRGGKVIEKEVNNDGYRITLRREINGNGVLDGIGKR
IENGDYDIVEYNSDKWYQIHRYYSGIDNSLKGIYINISTPPELLKGKIRYLDLEIDIAIRDSEIIVLDEDELNKKSIYMH
SSLVNKAKEVANYLIDCIQQNKLI

Specific function: Binds to RNA in loop regions with AU-rich sequences

COG id: COG1530

COG function: function code J; Ribonucleases G and E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AubA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): AUBA_SULIA (C3N509)

Other databases:

- EMBL:   CP001401
- RefSeq:   YP_002843129.1
- ProteinModelPortal:   C3N509
- GeneID:   7812970
- GenomeReviews:   CP001401_GR
- KEGG:   sim:M1627_1196
- OMA:   RGIYSTA
- ProtClustDB:   CLSK2752042
- HAMAP:   MF_01910
- InterPro:   IPR007295
- InterPro:   IPR019307
- InterPro:   IPR016730
- PIRSF:   PIRSF018644

Pfam domain/function: PF04167 DUF402; PF10150 RNase_E_G

EC number: NA

Molecular weight: Translated: 49147; Mature: 49147

Theoretical pI: Translated: 6.45; Mature: 6.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGRVRIRGIYATALTSIFSSLSYEIVQQSVEIAERFMREVNNLPADITIKDFEYDRGKI
CCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEE
IVMGNGTIEEDLHDVFKYSFHWKSPIKLYSVIEADESCTYGNFKVEPCLEEGIVIKPPYD
EEEECCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCEEECCHHHCCEEEECCCC
GKIVLSETKAVSKYAMVWRGKGVTTFSEHINNEEERLRLLTLSSPLNRKGYNVKWRSNAK
CEEEEECCHHHHHHHHEEECCCCCHHHHHCCCHHHEEEEEEECCCCCCCCCEEEECCCCC
YATLNELKEDLERLVLRYENREFRDQGEDFYLITLSLPDKLHLDEVRKSIVNTVKYHHML
EEHHHHHHHHHHHHHHHHCCCHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHEEE
KLSYNREVDSLEKDKEGSPVKLLEALISDFMKIEHIKADGKAIYLRGGKVIEKEVNNDGY
EEECCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHEEECCCCEEEEECCEEEEECCCCCCE
RITLRREINGNGVLDGIGKRIENGDYDIVEYNSDKWYQIHRYYSGIDNSLKGIYINISTP
EEEEEEECCCCCCCHHHHHHCCCCCEEEEEECCCCCEEHHHHHHCCCCCCCEEEEEECCC
PELLKGKIRYLDLEIDIAIRDSEIIVLDEDELNKKSIYMHSSLVNKAKEVANYLIDCIQQ
HHHHCCEEEEEEEEEEEEEECCEEEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHH
NKLI
CCCC
>Mature Secondary Structure
MKGRVRIRGIYATALTSIFSSLSYEIVQQSVEIAERFMREVNNLPADITIKDFEYDRGKI
CCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEE
IVMGNGTIEEDLHDVFKYSFHWKSPIKLYSVIEADESCTYGNFKVEPCLEEGIVIKPPYD
EEEECCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCEEECCHHHCCEEEECCCC
GKIVLSETKAVSKYAMVWRGKGVTTFSEHINNEEERLRLLTLSSPLNRKGYNVKWRSNAK
CEEEEECCHHHHHHHHEEECCCCCHHHHHCCCHHHEEEEEEECCCCCCCCCEEEECCCCC
YATLNELKEDLERLVLRYENREFRDQGEDFYLITLSLPDKLHLDEVRKSIVNTVKYHHML
EEHHHHHHHHHHHHHHHHCCCHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHEEE
KLSYNREVDSLEKDKEGSPVKLLEALISDFMKIEHIKADGKAIYLRGGKVIEKEVNNDGY
EEECCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHEEECCCCEEEEECCEEEEECCCCCCE
RITLRREINGNGVLDGIGKRIENGDYDIVEYNSDKWYQIHRYYSGIDNSLKGIYINISTP
EEEEEEECCCCCCCHHHHHHCCCCCEEEEEECCCCCEEHHHHHHCCCCCCCEEEEEECCC
PELLKGKIRYLDLEIDIAIRDSEIIVLDEDELNKKSIYMHSSLVNKAKEVANYLIDCIQQ
HHHHCCEEEEEEEEEEEEEECCEEEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHH
NKLI
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA