Click here to switch to the map view.

The map label for this gene is 227827351

Identifier: 227827351

GI number: 227827351

Start: 1018230

End: 1018658

Strand: Direct

Name: 227827351

Synonym: M1425_1070

Alternate gene names: NA

Gene position: 1018230-1018658 (Clockwise)

Preceding gene: 227827349

Following gene: 227827352

Centisome position: 39.03

GC content: 33.33

Gene sequence:

>429_bases
GTGATTCCCCCTAAGTTTAGAGAATATGCTAAAGCCTTCTTAAATATAGCAAAAAAAGATAATATTAGGGCTAAAAGGGC
CTTAGAACTAAAAGACTATCCTGAATGTTTCTTTTACTCTCAACAATCCGTCGAAAAAAGCGTGAAAGCTATGTTAGAAG
TAAAATTAATATATAAGAAAGAACACGACATCATAGCGGATGCTTCGAATAATTTACAAGATCTTGGAAACGAATTAGAT
GTAGTTTTGAATGCATTAGATTACCTTTCTGGTGCATGGAACATGTCTAGATATCCATTTTTTAACGGAAATAATATAAC
TACTCCAGAGGAATTTGTGACTGAGGAAATGTGTAGGCAAGGAATAAACTATTCTGATGAGGTGATCAGCATTGCAGAGA
ATTATCTTAGAAAACATGGAGTTATTTAG

Upstream 100 bases:

>100_bases
ATTTCTATAAATCATAAAAAAGGGGATCAGCCCTAAGATCTGATATTGTCGATACGAAGGATTTCTCAAAAGATTTATTC
TTTTACTTTGGAAGTTACTT

Downstream 100 bases:

>100_bases
AAAAGCCACCTTTTTGTTAAGAAGAAACGGAGTACTTGCAATAGTATTCTTTGGAAGTAGAGTTATAGGTAAATATAAGA
AGGACTCGGATTTGGATGTA

Product: HEPN domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 142

Protein sequence:

>142_residues
MIPPKFREYAKAFLNIAKKDNIRAKRALELKDYPECFFYSQQSVEKSVKAMLEVKLIYKKEHDIIADASNNLQDLGNELD
VVLNALDYLSGAWNMSRYPFFNGNNITTPEEFVTEEMCRQGINYSDEVISIAENYLRKHGVI

Sequences:

>Translated_142_residues
MIPPKFREYAKAFLNIAKKDNIRAKRALELKDYPECFFYSQQSVEKSVKAMLEVKLIYKKEHDIIADASNNLQDLGNELD
VVLNALDYLSGAWNMSRYPFFNGNNITTPEEFVTEEMCRQGINYSDEVISIAENYLRKHGVI
>Mature_142_residues
MIPPKFREYAKAFLNIAKKDNIRAKRALELKDYPECFFYSQQSVEKSVKAMLEVKLIYKKEHDIIADASNNLQDLGNELD
VVLNALDYLSGAWNMSRYPFFNGNNITTPEEFVTEEMCRQGINYSDEVISIAENYLRKHGVI

Specific function: Unknown

COG id: COG2250

COG function: function code S; Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16450; Mature: 16450

Theoretical pI: Translated: 5.29; Mature: 5.29

Prosite motif: PS50910 HEPN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPPKFREYAKAFLNIAKKDNIRAKRALELKDYPECFFYSQQSVEKSVKAMLEVKLIYKK
CCCHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
EHDIIADASNNLQDLGNELDVVLNALDYLSGAWNMSRYPFFNGNNITTPEEFVTEEMCRQ
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCHHHHHHHHHHHC
GINYSDEVISIAENYLRKHGVI
CCCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MIPPKFREYAKAFLNIAKKDNIRAKRALELKDYPECFFYSQQSVEKSVKAMLEVKLIYKK
CCCHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
EHDIIADASNNLQDLGNELDVVLNALDYLSGAWNMSRYPFFNGNNITTPEEFVTEEMCRQ
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCHHHHHHHHHHHC
GINYSDEVISIAENYLRKHGVI
CCCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA