Click here to switch to the map view.

The map label for this gene is yibD [C]

Identifier: 227827282

GI number: 227827282

Start: 930144

End: 931079

Strand: Direct

Name: yibD [C]

Synonym: M1425_0983

Alternate gene names: 227827282

Gene position: 930144-931079 (Clockwise)

Preceding gene: 227827281

Following gene: 227827283

Centisome position: 35.65

GC content: 33.97

Gene sequence:

>936_bases
GTGATAAACTATATTAAACTAGAGTTCCATGTAAAGTTGATGGTAAAAGTAAGTGTTGCAATTCCCACGTACAATAGAAA
GGAAAAACTCAGAAGGCTATTAAGCTCACTTAAAGAATCTACTTTTAAGGATTTTGAAGTTATAGTTGTAGATGACGCTT
CTACTGACGGTACTGAGGAAATGATAAAAAATGAATTTCCTTACGTAAAATACATTAAACATGAGAAACCTACGCTAGTA
GCTAAGTCCAGAAATGACGCTATAGAAGCTTCTGAAGGAGATTACATATTCTTTATAGACGATGATAATGTAGTGGAGAG
AGATACAATTGAAAAGCTTTTAAATTATATTGAAAAGCATGAGGAGATCGGAACTATAGCCCCGGTTACTTGCTATTACT
CGTCTCCAGATAAGATCATGTATGCTGGTGCAGTCTTCTCTAAGTTTATGAGAAGGACAATTTCCTTATATTCTGGCTTC
CCTTGTAAAGCTTTAGAAGGAAAAGTGATAGAAGTAGACGTATTTGCAAATAGTTACATGTTTAGGAAGGAAGCAATAAG
GAAGGCTGGGTTAATACCTTGGAAGAGAATACCTTGGAATGGGGAGGATGGGTATTTACAATATAAAATAAAAAAATTGG
GTTACAAAAACGTGACGTTAGGTTCTGCAAGGGTTTATCATGACGTTGATCCAAATGAGGGAGTTAAAAGATATAATGAA
ATGAGGTTATATTATGCCATAAGATCTAAGATTATATTTCATAAGGATCTTGATCCTGCGTCGAGGAAAATTTTCTTTTA
TTTATCATTACCTATATACTTAGTGTATTGGTTAAATGTGGCTTATAAAACAAGGAGAGGTTTAAAAGGAGTAAGAGCTG
TAATAGATGGACTCATTGACGGAATAATGGGCTCGGAGAATGTAAAATATATTTAA

Upstream 100 bases:

>100_bases
TTAAAAATAGCTTAGAAAAGAATGGTTACAAGGTAAAGGTTGAGCACACATTAAAGAGTTTAGGATTTATATACACAATA
AAATAATATCTTTGACATAC

Downstream 100 bases:

>100_bases
ATATACTTCAATTAAAGTTTAATATGTTAATTAATTAACTATAGATATTTACTCGATTAATTTTATTTCTTCCTTCCAAT
CAATAATATCCTAGATCCAA

Product: glycosyl transferase family 2

Products: NA

Alternate protein names: Glycosyl Transferase Family Protein; Glycosyl Transferase GT2 Family Protein; Glycosyl Transferase Family 2 Protein; Glycosyl Transferase Group 2 Family; Glycosyltransferase/Rhamnosyltransferase; Transferase; Rhamnosyl Transferase RfbQ; Capsule-Related Glycosyltransferase; Glycoside Transferase Family 2 Protein; Rhamnosyl Transferase; Family 2 Glycosyl Transferase; Glycosyl Transferase; Glycosyl Transferase Group 2 Family Protein

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MINYIKLEFHVKLMVKVSVAIPTYNRKEKLRRLLSSLKESTFKDFEVIVVDDASTDGTEEMIKNEFPYVKYIKHEKPTLV
AKSRNDAIEASEGDYIFFIDDDNVVERDTIEKLLNYIEKHEEIGTIAPVTCYYSSPDKIMYAGAVFSKFMRRTISLYSGF
PCKALEGKVIEVDVFANSYMFRKEAIRKAGLIPWKRIPWNGEDGYLQYKIKKLGYKNVTLGSARVYHDVDPNEGVKRYNE
MRLYYAIRSKIIFHKDLDPASRKIFFYLSLPIYLVYWLNVAYKTRRGLKGVRAVIDGLIDGIMGSENVKYI

Sequences:

>Translated_311_residues
MINYIKLEFHVKLMVKVSVAIPTYNRKEKLRRLLSSLKESTFKDFEVIVVDDASTDGTEEMIKNEFPYVKYIKHEKPTLV
AKSRNDAIEASEGDYIFFIDDDNVVERDTIEKLLNYIEKHEEIGTIAPVTCYYSSPDKIMYAGAVFSKFMRRTISLYSGF
PCKALEGKVIEVDVFANSYMFRKEAIRKAGLIPWKRIPWNGEDGYLQYKIKKLGYKNVTLGSARVYHDVDPNEGVKRYNE
MRLYYAIRSKIIFHKDLDPASRKIFFYLSLPIYLVYWLNVAYKTRRGLKGVRAVIDGLIDGIMGSENVKYI
>Mature_311_residues
MINYIKLEFHVKLMVKVSVAIPTYNRKEKLRRLLSSLKESTFKDFEVIVVDDASTDGTEEMIKNEFPYVKYIKHEKPTLV
AKSRNDAIEASEGDYIFFIDDDNVVERDTIEKLLNYIEKHEEIGTIAPVTCYYSSPDKIMYAGAVFSKFMRRTISLYSGF
PCKALEGKVIEVDVFANSYMFRKEAIRKAGLIPWKRIPWNGEDGYLQYKIKKLGYKNVTLGSARVYHDVDPNEGVKRYNE
MRLYYAIRSKIIFHKDLDPASRKIFFYLSLPIYLVYWLNVAYKTRRGLKGVRAVIDGLIDGIMGSENVKYI

Specific function: Unknown

COG id: COG1216

COG function: function code R; Predicted glycosyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790044, Length=102, Percent_Identity=33.3333333333333, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.-.-.- [C]

Molecular weight: Translated: 36172; Mature: 36172

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINYIKLEFHVKLMVKVSVAIPTYNRKEKLRRLLSSLKESTFKDFEVIVVDDASTDGTEE
CCEEEEEEEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHH
MIKNEFPYVKYIKHEKPTLVAKSRNDAIEASEGDYIFFIDDDNVVERDTIEKLLNYIEKH
HHHCCCCCEEEEECCCCEEEEECCCCCEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
EEIGTIAPVTCYYSSPDKIMYAGAVFSKFMRRTISLYSGFPCKALEGKVIEVDVFANSYM
HHCCCCCEEEEEECCCCCEEEHHHHHHHHHHHHHHHHCCCCCHHCCCEEEEEEEECCCHH
FRKEAIRKAGLIPWKRIPWNGEDGYLQYKIKKLGYKNVTLGSARVYHDVDPNEGVKRYNE
HHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCEEEECCEEEEECCCCCHHHHHHHH
MRLYYAIRSKIIFHKDLDPASRKIFFYLSLPIYLVYWLNVAYKTRRGLKGVRAVIDGLID
HHHEEEEHHEEEEECCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GIMGSENVKYI
HHCCCCCCCCC
>Mature Secondary Structure
MINYIKLEFHVKLMVKVSVAIPTYNRKEKLRRLLSSLKESTFKDFEVIVVDDASTDGTEE
CCEEEEEEEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHH
MIKNEFPYVKYIKHEKPTLVAKSRNDAIEASEGDYIFFIDDDNVVERDTIEKLLNYIEKH
HHHCCCCCEEEEECCCCEEEEECCCCCEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
EEIGTIAPVTCYYSSPDKIMYAGAVFSKFMRRTISLYSGFPCKALEGKVIEVDVFANSYM
HHCCCCCEEEEEECCCCCEEEHHHHHHHHHHHHHHHHCCCCCHHCCCEEEEEEEECCCHH
FRKEAIRKAGLIPWKRIPWNGEDGYLQYKIKKLGYKNVTLGSARVYHDVDPNEGVKRYNE
HHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCEEEECCEEEEECCCCCHHHHHHHH
MRLYYAIRSKIIFHKDLDPASRKIFFYLSLPIYLVYWLNVAYKTRRGLKGVRAVIDGLID
HHHEEEEHHEEEEECCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GIMGSENVKYI
HHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA