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The map label for this gene is 227826587

Identifier: 227826587

GI number: 227826587

Start: 154396

End: 155109

Strand: Direct

Name: 227826587

Synonym: M1425_0177

Alternate gene names: NA

Gene position: 154396-155109 (Clockwise)

Preceding gene: 227826586

Following gene: 227826588

Centisome position: 5.92

GC content: 37.25

Gene sequence:

>714_bases
ATGTCAGGGAAGTTCTGTGTGCTATGCGGAAAGCAAAATGTTGAGCTAATAGACTCACTCTGCGCTGACTGCTATGTAAA
ATCTAAAAAACTGATAGAAGTACCTAAAAGGATAACCGGAAAGTATTGCAAGATCTGTGGTGCACAATGGATTAAGGGAA
AGTGGATAAGGACTTCAGCAACATCTCTAGCTTCAGTCGTGGAGGATATTATAATAAGAGAAGTGGGGAATAAGATAGAC
ATTGATAAAAACGTAGAGGAGTTCGCATTTGATATAAAGAGCATATGGAAGGATCCAAGTGGTAATTCCTTTGCTACTAT
TGAATTTAGAGGGAACGTAAGAGGTAAGCCCTTTTCCCAAGAGGCGATAATTAGTTTGGAAATGGAAAGGACATTATGTG
ACTCGTGCTTTAGGAAAAAGACACGATATTATGAGGCCATAGTTCAACTGAGGAGTAAAGGTAAGATTGGGATTGACGAT
AAGAAGAGAGCGTTCTTCGAATCCTTTTTCTCTACAAGCATAGTGGATAATATTTCTGATGTTATTGAGGGTAGAGAGGG
TGTGGATTATTATTTTATGAGTAAAAGTGTTGCAAGAAAGCTTATATCGATGATATCTTCTATTGTTGACGTTGAAGTTA
ATGAGAGTTATCAGAATGAAAAGATGAAAAACGGTAAAAGGGAGGCAAAACTAGTTATTTCATTGAGGATATGA

Upstream 100 bases:

>100_bases
ACGCGGTAGAAGAGGCAATAAGGAGAGGGTTAGTTCACAAGGATTCTGTCATCAATGTAGCTGGTGTAAAATTCGCTCAA
GTTTATAATGTGTGAAACTT

Downstream 100 bases:

>100_bases
GAATAGGTATAGACGAAGCAGGTCGTGGAGCCTTAATAGGTCCAATGATAGTTGCAGGTGTAGCTATCAGTGATTCAAAG
CTAAAATTCCTTAAAGGCAT

Product: NMD3 family protein

Products: NA

Alternate protein names: NMD Protein Affecting Ribosome Stability And MRNA Decay; NMD3-Related Protein; Nonsense Mediated MRNA Decay Protein; Nmd3 Family Protein; Nonsense MRNA Decay Protein; Nonsense-Mediated MRNA Decay Protein NMD3-Like Protein; Nonsense-Mediated MRNA Decay NMD3 Like Protein; Nonsense Mediated MRNA Decay

Number of amino acids: Translated: 237; Mature: 236

Protein sequence:

>237_residues
MSGKFCVLCGKQNVELIDSLCADCYVKSKKLIEVPKRITGKYCKICGAQWIKGKWIRTSATSLASVVEDIIIREVGNKID
IDKNVEEFAFDIKSIWKDPSGNSFATIEFRGNVRGKPFSQEAIISLEMERTLCDSCFRKKTRYYEAIVQLRSKGKIGIDD
KKRAFFESFFSTSIVDNISDVIEGREGVDYYFMSKSVARKLISMISSIVDVEVNESYQNEKMKNGKREAKLVISLRI

Sequences:

>Translated_237_residues
MSGKFCVLCGKQNVELIDSLCADCYVKSKKLIEVPKRITGKYCKICGAQWIKGKWIRTSATSLASVVEDIIIREVGNKID
IDKNVEEFAFDIKSIWKDPSGNSFATIEFRGNVRGKPFSQEAIISLEMERTLCDSCFRKKTRYYEAIVQLRSKGKIGIDD
KKRAFFESFFSTSIVDNISDVIEGREGVDYYFMSKSVARKLISMISSIVDVEVNESYQNEKMKNGKREAKLVISLRI
>Mature_236_residues
SGKFCVLCGKQNVELIDSLCADCYVKSKKLIEVPKRITGKYCKICGAQWIKGKWIRTSATSLASVVEDIIIREVGNKIDI
DKNVEEFAFDIKSIWKDPSGNSFATIEFRGNVRGKPFSQEAIISLEMERTLCDSCFRKKTRYYEAIVQLRSKGKIGIDDK
KRAFFESFFSTSIVDNISDVIEGREGVDYYFMSKSVARKLISMISSIVDVEVNESYQNEKMKNGKREAKLVISLRI

Specific function: Unknown

COG id: COG1499

COG function: function code J; NMD protein affecting ribosome stability and mRNA decay

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26971; Mature: 26839

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGKFCVLCGKQNVELIDSLCADCYVKSKKLIEVPKRITGKYCKICGAQWIKGKWIRTSA
CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEHHH
TSLASVVEDIIIREVGNKIDIDKNVEEFAFDIKSIWKDPSGNSFATIEFRGNVRGKPFSQ
HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCC
EAIISLEMERTLCDSCFRKKTRYYEAIVQLRSKGKIGIDDKKRAFFESFFSTSIVDNISD
HHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
VIEGREGVDYYFMSKSVARKLISMISSIVDVEVNESYQNEKMKNGKREAKLVISLRI
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCEEEEEEEEEC
>Mature Secondary Structure 
SGKFCVLCGKQNVELIDSLCADCYVKSKKLIEVPKRITGKYCKICGAQWIKGKWIRTSA
CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEHHH
TSLASVVEDIIIREVGNKIDIDKNVEEFAFDIKSIWKDPSGNSFATIEFRGNVRGKPFSQ
HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCC
EAIISLEMERTLCDSCFRKKTRYYEAIVQLRSKGKIGIDDKKRAFFESFFSTSIVDNISD
HHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
VIEGREGVDYYFMSKSVARKLISMISSIVDVEVNESYQNEKMKNGKREAKLVISLRI
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA