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The map label for this gene is ywhC [H]

Identifier: 227818143

GI number: 227818143

Start: 5115169

End: 5115843

Strand: Reverse

Name: ywhC [H]

Synonym: BAMEG_5669

Alternate gene names: 227818143

Gene position: 5115843-5115169 (Counterclockwise)

Preceding gene: 227818145

Following gene: 227818142

Centisome position: 97.82

GC content: 36.0

Gene sequence:

>675_bases
ATGGATCAGTTATTTAGATACCCGTTGCACCAAATTCCTTTGGTAGCAATGGCCATTATTATTGCGTTATCTGTGCATGA
ATTTGCGCATGCATATGTTGCATATAAATTTGGAGACGATACTGCAAAGCGGCAAGGTCGCTTAACTTTATCACCGATGG
CTCACTTAGACCCTATCGGGATGATTGCTGTATTAATTCTTGGTTTCGGTTGGGCAAGACCAGTTCCTGTTAACCCGTAC
AATTTTAAAAGACCACGTCTTGCTGGTATATTAGTTTCAATTGCAGGACCAATTAGTAACTTGATTTTAAGTGCAATTGG
TTTAATTATTTGGTATAGCTTATTAACATTTGGTGTATTAGACTCAATTCCATTTGCAGTAGCAGATACGTTAGCTCAAT
TTTTCCAGATTTTTATTATGTTGAATATCGTTTTACTGGTCTTTAACTTATTACCAATCCCGCCACTTGATGGATATCGT
GTAGTGGAGGATTTAGCACCAACAAATATTCGTGCGAAAATGACACAGTATGAAAAATACGGGGCGATTGCGTTATTAAT
TCTTGTTATTACACCGCTTAGCAATTACACAATCCAACCTATTTTTAATGTTGTCATTCCATATGTATTTGCATTTTTAA
ATAGTATCATTGCGCCTATTTTTGGCCTTTTATAA

Upstream 100 bases:

>100_bases
CCTTTTATGTAAGTTACACTCTTATTATAGCGGATTATGGGGAAGAACAATCAAAAAACAAATAATTTCTTTTTTTGACA
TATTGAAGAGGAGATGAAGC

Downstream 100 bases:

>100_bases
TCATTAAGTGAGGAGGAATTTACATATGACAGAGAAAAAGAAAAAAATCGGTTTTAATATCGTGAAAAATGATTCAACGG
ATGGACATGGTGGATTTGGT

Product: peptidase, M50 family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MDQLFRYPLHQIPLVAMAIIIALSVHEFAHAYVAYKFGDDTAKRQGRLTLSPMAHLDPIGMIAVLILGFGWARPVPVNPY
NFKRPRLAGILVSIAGPISNLILSAIGLIIWYSLLTFGVLDSIPFAVADTLAQFFQIFIMLNIVLLVFNLLPIPPLDGYR
VVEDLAPTNIRAKMTQYEKYGAIALLILVITPLSNYTIQPIFNVVIPYVFAFLNSIIAPIFGLL

Sequences:

>Translated_224_residues
MDQLFRYPLHQIPLVAMAIIIALSVHEFAHAYVAYKFGDDTAKRQGRLTLSPMAHLDPIGMIAVLILGFGWARPVPVNPY
NFKRPRLAGILVSIAGPISNLILSAIGLIIWYSLLTFGVLDSIPFAVADTLAQFFQIFIMLNIVLLVFNLLPIPPLDGYR
VVEDLAPTNIRAKMTQYEKYGAIALLILVITPLSNYTIQPIFNVVIPYVFAFLNSIIAPIFGLL
>Mature_224_residues
MDQLFRYPLHQIPLVAMAIIIALSVHEFAHAYVAYKFGDDTAKRQGRLTLSPMAHLDPIGMIAVLILGFGWARPVPVNPY
NFKRPRLAGILVSIAGPISNLILSAIGLIIWYSLLTFGVLDSIPFAVADTLAQFFQIFIMLNIVLLVFNLLPIPPLDGYR
VVEDLAPTNIRAKMTQYEKYGAIALLILVITPLSNYTIQPIFNVVIPYVFAFLNSIIAPIFGLL

Specific function: Unknown

COG id: COG1994

COG function: function code R; Zn-dependent proteases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M50B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008915 [H]

Pfam domain/function: PF02163 Peptidase_M50 [H]

EC number: NA

Molecular weight: Translated: 24865; Mature: 24865

Theoretical pI: Translated: 9.19; Mature: 9.19

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQLFRYPLHQIPLVAMAIIIALSVHEFAHAYVAYKFGDDTAKRQGRLTLSPMAHLDPIG
CCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHCCCEEECCHHHCCHHH
MIAVLILGFGWARPVPVNPYNFKRPRLAGILVSIAGPISNLILSAIGLIIWYSLLTFGVL
HHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DSIPFAVADTLAQFFQIFIMLNIVLLVFNLLPIPPLDGYRVVEDLAPTNIRAKMTQYEKY
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHHH
GAIALLILVITPLSNYTIQPIFNVVIPYVFAFLNSIIAPIFGLL
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDQLFRYPLHQIPLVAMAIIIALSVHEFAHAYVAYKFGDDTAKRQGRLTLSPMAHLDPIG
CCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHCCCEEECCHHHCCHHH
MIAVLILGFGWARPVPVNPYNFKRPRLAGILVSIAGPISNLILSAIGLIIWYSLLTFGVL
HHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DSIPFAVADTLAQFFQIFIMLNIVLLVFNLLPIPPLDGYRVVEDLAPTNIRAKMTQYEKY
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHHH
GAIALLILVITPLSNYTIQPIFNVVIPYVFAFLNSIIAPIFGLL
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]