Click here to switch to the map view.

The map label for this gene is ydjC [C]

Identifier: 227817965

GI number: 227817965

Start: 4931844

End: 4932548

Strand: Reverse

Name: ydjC [C]

Synonym: BAMEG_5490

Alternate gene names: 227817965

Gene position: 4932548-4931844 (Counterclockwise)

Preceding gene: 227817966

Following gene: 227817963

Centisome position: 94.31

GC content: 38.3

Gene sequence:

>705_bases
ATGATTAAATTAATTGTAAATGCAGATGATTTCGGTCTTACAGAAGGTACAAATTATGGCATTATTGATGGACATATAAA
TGGACTTGTAAATTCAACGACGATGATGATGAATATGCCAGGGACAGAGCATGCGGTACACTTAGCAAAAGAGTATAAAA
CGTTAGGGGTAGGAGTACATCTCGTATTAACGGCAGGGAAACCGCTTCTTGGAGATGTACCATCACTTGTAAGTAGCGAT
GGATTGTTTCATAAACAAAGCGTCGTATGGGAAGGGAAGGTAAATCCAGAGGAAGTTGAGAGAGAGTGGACTGCTCAAAT
TGAGAAATTCTTATCTTACGGATTAAAACCAACTCATTTAGATAGTCATCATCACGTGCATGGATTAACGATCTTGCACG
ATGTTTTGGAAAGATTAGCTGCTACATATAATGTTCCAATTCGTCGTTGTGAAGAAGAGCGAGCAGTGCGTCCATTTTCT
GACTTGTTTTACAGTGATTTTTATGCGGATGGTGTGACGGAAGATTATTTCGTAAAGTTAAAAGAAAGAGTACAAGGTGA
ACAAACGGTAGAAATTATGGTTCATCCAGCTTATATTGATCCAGAGCTTGTGAAGCGTTCTTCTTACGTAATGGATCGTG
TGAAAGAATTGCGTATTTTAACAGAGAGTGAGTTGCCTGAAGGAATAGAGCTTGTAAAGTTTTAA

Upstream 100 bases:

>100_bases
GAAGCGCATAAAGAATATCTTCCGCAGTTCTTCAAAAAGGTAGAGAAATAAAAGCGGCGCTATTTAGCCCGCTTTTTTTA
TTCTATTAGGAGGTATTACG

Downstream 100 bases:

>100_bases
TAGAAAAAAGACGGCTACATTATGCCGTCTTTTTTTATTTACAAAATGGATAGAACATATCCGCCAAAGGCTCCAAGTAT
AACGATAACCCAAGGTGGTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MIKLIVNADDFGLTEGTNYGIIDGHINGLVNSTTMMMNMPGTEHAVHLAKEYKTLGVGVHLVLTAGKPLLGDVPSLVSSD
GLFHKQSVVWEGKVNPEEVEREWTAQIEKFLSYGLKPTHLDSHHHVHGLTILHDVLERLAATYNVPIRRCEEERAVRPFS
DLFYSDFYADGVTEDYFVKLKERVQGEQTVEIMVHPAYIDPELVKRSSYVMDRVKELRILTESELPEGIELVKF

Sequences:

>Translated_234_residues
MIKLIVNADDFGLTEGTNYGIIDGHINGLVNSTTMMMNMPGTEHAVHLAKEYKTLGVGVHLVLTAGKPLLGDVPSLVSSD
GLFHKQSVVWEGKVNPEEVEREWTAQIEKFLSYGLKPTHLDSHHHVHGLTILHDVLERLAATYNVPIRRCEEERAVRPFS
DLFYSDFYADGVTEDYFVKLKERVQGEQTVEIMVHPAYIDPELVKRSSYVMDRVKELRILTESELPEGIELVKF
>Mature_234_residues
MIKLIVNADDFGLTEGTNYGIIDGHINGLVNSTTMMMNMPGTEHAVHLAKEYKTLGVGVHLVLTAGKPLLGDVPSLVSSD
GLFHKQSVVWEGKVNPEEVEREWTAQIEKFLSYGLKPTHLDSHHHVHGLTILHDVLERLAATYNVPIRRCEEERAVRPFS
DLFYSDFYADGVTEDYFVKLKERVQGEQTVEIMVHPAYIDPELVKRSSYVMDRVKELRILTESELPEGIELVKF

Specific function: Unknown

COG id: COG3394

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0249 family [H]

Homologues:

Organism=Homo sapiens, GI63054868, Length=279, Percent_Identity=28.673835125448, Blast_Score=80, Evalue=1e-15,
Organism=Escherichia coli, GI1788028, Length=237, Percent_Identity=37.9746835443038, Blast_Score=156, Evalue=9e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002509
- InterPro:   IPR006879
- InterPro:   IPR022948 [H]

Pfam domain/function: PF04794 YdjC [H]

EC number: NA

Molecular weight: Translated: 26487; Mature: 26487

Theoretical pI: Translated: 5.33; Mature: 5.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKLIVNADDFGLTEGTNYGIIDGHINGLVNSTTMMMNMPGTEHAVHLAKEYKTLGVGVH
CEEEEEECCCCCCCCCCCCEEEECCCCCEECCEEEEEECCCCHHHHHHHHHHHHHCCCEE
LVLTAGKPLLGDVPSLVSSDGLFHKQSVVWEGKVNPEEVEREWTAQIEKFLSYGLKPTHL
EEEECCCCCCCCCHHHHCCCCCEECCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCC
DSHHHVHGLTILHDVLERLAATYNVPIRRCEEERAVRPFSDLFYSDFYADGVTEDYFVKL
CCCCCHHHHHHHHHHHHHHHHHCCCHHHHCCHHHCCCCHHHHHHHHHHCCCCCHHHHHHH
KERVQGEQTVEIMVHPAYIDPELVKRSSYVMDRVKELRILTESELPEGIELVKF
HHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHECCC
>Mature Secondary Structure
MIKLIVNADDFGLTEGTNYGIIDGHINGLVNSTTMMMNMPGTEHAVHLAKEYKTLGVGVH
CEEEEEECCCCCCCCCCCCEEEECCCCCEECCEEEEEECCCCHHHHHHHHHHHHHCCCEE
LVLTAGKPLLGDVPSLVSSDGLFHKQSVVWEGKVNPEEVEREWTAQIEKFLSYGLKPTHL
EEEECCCCCCCCCHHHHCCCCCEECCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCC
DSHHHVHGLTILHDVLERLAATYNVPIRRCEEERAVRPFSDLFYSDFYADGVTEDYFVKL
CCCCCHHHHHHHHHHHHHHHHHCCCHHHHCCHHHCCCCHHHHHHHHHHCCCCCHHHHHHH
KERVQGEQTVEIMVHPAYIDPELVKRSSYVMDRVKELRILTESELPEGIELVKF
HHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12721630 [H]